2KKD
NMR Structure of Ni Substitued Desulfovibrio vulgaris Rubredoxin
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 50 mM sodium phosphate-1 | 90% H2O/10% D2O | 0.05 | 7.2 | ambient | 296 | |
2 | 3D 1H-15N TOCSY | 50 mM sodium phosphate-1 | 90% H2O/10% D2O | 0.05 | 7.2 | ambient | 296 | |
3 | 2D 1H-15N HSQC | 50 mM sodium phosphate-1 | 90% H2O/10% D2O | 0.05 | 7.2 | ambient | 296 | |
4 | 2D 1H-1H NOESY | 50 mM sodium phosphate-2 | 90% H2O/10% D2O | 0.05 | 7.2 | ambient | 296 | |
5 | 2D 1H-1H TOCSY | 50 mM sodium phosphate-2 | 90% H2O/10% D2O | 0.05 | 7.2 | ambient | 296 | |
6 | 2D NOESY with fast recycle | 50 mM sodium phosphate-2 | 90% H2O/10% D2O | 0.05 | 7.2 | ambient | 296 | |
7 | 1D NOE difference with super-WEFT | 2 mM sodium azide-3 | 100% D2O | 0.05 | 7.2 | ambient | 296 | |
8 | 2D NOESY with fast recycle | 2 mM sodium azide-3 | 100% D2O | 0.05 | 7.2 | ambient | 296 | |
9 | 2D 1H-1H NOESY | 2 mM sodium azide-3 | 100% D2O | 0.05 | 7.2 | ambient | 296 | |
10 | 2D 1H-1H TOCSY | 2 mM sodium azide-3 | 100% D2O | 0.05 | 7.2 | ambient | 296 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
2 | Bruker | DRX | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | structure refinement used pseudocontact shifts | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 400 |
Conformers Submitted Total Number | 15 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CYANA | Guntert P. |