Solution structure of sh2 domain of proto-oncogene tyrosine-protein kinase fer from homo sapiens, northeast structural genomics consortium (nesg) target hr3461d
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 1.03 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 6.5 | ambient | 298 | |
| 2 | 2D 1H-13C HSQC | 1.20 mM [U-10% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 6.5 | ambient | 298 | |
| 3 | 3D CBCA(CO)NH | 1.20 mM [U-10% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 6.5 | ambient | 298 | |
| 4 | 3D HNCACB | 1.03 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 6.5 | ambient | 298 | |
| 5 | 3D HNCO | 1.03 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 6.5 | ambient | 298 | |
| 6 | 3D HBHA(CO)NH | 1.03 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 6.5 | ambient | 298 | |
| 7 | 3D C(CO)NH | 1.03 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 6.5 | ambient | 298 | |
| 8 | 3D 1H-15N NOESY | 1.03 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 6.5 | ambient | 298 | |
| 9 | 3D 1H-13C NOESY | 1.03 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 6.5 | ambient | 298 | |
| 10 | 3D HCCH-TOCSY | 1.03 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 6.5 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing, molecular dynamics | CNS | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (fewest violations) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |
| 2 | geometry optimization | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |
| 3 | refinement | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |
| 4 | structure solution | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
| 5 | geometry optimization | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
| 6 | refinement | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
| 7 | data analysis | AutoStructure | 2.1 | Huang, Tejero, Powers and Montelione |
| 8 | refinement | AutoStructure | 2.1 | Huang, Tejero, Powers and Montelione |
| 9 | data analysis | AutoAssign | 2.1 | Zimmerman, Moseley, Kulikowski and Montelione |
| 10 | chemical shift assignment | AutoAssign | 2.1 | Zimmerman, Moseley, Kulikowski and Montelione |
| 11 | data analysis | Sparky | 2.1 | Goddard |
| 12 | chemical shift assignment | Sparky | 2.1 | Goddard |
| 13 | peak picking | Sparky | 2.1 | Goddard |
| 14 | processing | NMRPipe | 2.1 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
| 15 | collection | TopSpin | 2.1 | Bruker Biospin |
