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Solution structure of extended PDZ2 domain from NHERF1 (150-270)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 550 uM [U-100% 13C; U-100% 15N] PDZ2-270-1, 20 mM HEPES-2, 0.5 mM DTT-3, 0.1 mM PMSF-4, 150 mM sodium chloride-5 90% H2O/10% D2O 0.150 7.5 ambient 303 2 2D 1H-13C HSQC 550 uM [U-100% 13C; U-100% 15N] PDZ2-270-1, 20 mM HEPES-2, 0.5 mM DTT-3, 0.1 mM PMSF-4, 150 mM sodium chloride-5 90% H2O/10% D2O 0.150 7.5 ambient 303 3 3D HNCACB 550 uM [U-100% 13C; U-100% 15N] PDZ2-270-1, 20 mM HEPES-2, 0.5 mM DTT-3, 0.1 mM PMSF-4, 150 mM sodium chloride-5 90% H2O/10% D2O 0.150 7.5 ambient 303 4 3D HCCH-TOCSY 550 uM [U-100% 13C; U-100% 15N] PDZ2-270-1, 20 mM HEPES-2, 0.5 mM DTT-3, 0.1 mM PMSF-4, 150 mM sodium chloride-5 90% H2O/10% D2O 0.150 7.5 ambient 303 5 3D H(CCO)NH 550 uM [U-100% 13C; U-100% 15N] PDZ2-270-1, 20 mM HEPES-2, 0.5 mM DTT-3, 0.1 mM PMSF-4, 150 mM sodium chloride-5 90% H2O/10% D2O 0.150 7.5 ambient 303 6 3D 1H-15N NOESY 550 uM [U-100% 13C; U-100% 15N] PDZ2-270-1, 20 mM HEPES-2, 0.5 mM DTT-3, 0.1 mM PMSF-4, 150 mM sodium chloride-5 90% H2O/10% D2O 0.150 7.5 ambient 303 7 3D 1H-13C NOESY 550 uM [U-100% 13C; U-100% 15N] PDZ2-270-1, 20 mM HEPES-2, 0.5 mM DTT-3, 0.1 mM PMSF-4, 150 mM sodium chloride-5 90% H2O/10% D2O 0.150 7.5 ambient 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 900
NMR Refinement Method Details Software simulated annealing CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 500 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA 1.3 Guntert, Mumenthaler and Wuthrich 2 refinement ARIA 2.2 Linge, O'Donoghue and Nilges 3 data analysis CARA 1.5 Keller and Wuthrich 4 collection TopSpin 2.1 Bruker Biospin 5 processing TopSpin 2.1 Bruker Biospin 6 dihedral angle calculation TALOS Cornilescu, Delaglio and Bax