2KIW

Solution NMR structure of the domain N-terminal to the integrase domain of SH1003 from Staphylococcus haemolyticus. Northeast Structural Genomics Consortium Target ShR105F (64-166).


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.84 mM [U-100% 13C; U-100% 15N] SH1003, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
22D 1H-13C HSQC0.84 mM [U-100% 13C; U-100% 15N] SH1003, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
32D 1H-13C HSQC0.79 mM SH1003, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
43D 1H-15N NOESY0.84 mM [U-100% 13C; U-100% 15N] SH1003, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
53D 1H-13C NOESY0.84 mM [U-100% 13C; U-100% 15N] SH1003, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
63D HNCO0.84 mM [U-100% 13C; U-100% 15N] SH1003, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
73D HNCA0.84 mM [U-100% 13C; U-100% 15N] SH1003, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
83D HNCACB0.84 mM [U-100% 13C; U-100% 15N] SH1003, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
93D CBCA(CO)NH0.84 mM [U-100% 13C; U-100% 15N] SH1003, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
103D HN(CO)CA0.84 mM [U-100% 13C; U-100% 15N] SH1003, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
113D HBHA(CO)NH0.84 mM [U-100% 13C; U-100% 15N] SH1003, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
123D H(CCO)NH0.84 mM [U-100% 13C; U-100% 15N] SH1003, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
133D C(CO)NH0.84 mM [U-100% 13C; U-100% 15N] SH1003, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
143D HCCH-TOCSY0.84 mM [U-100% 13C; U-100% 15N] SH1003, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
153D HCCH-COSY0.84 mM [U-100% 13C; U-100% 15N] SH1003, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
163D HCCH-TOCSY0.84 mM [U-100% 13C; U-100% 15N] SH1003, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide100% D2O0.26.5ambient293
174D CC NOESY0.84 mM [U-100% 13C; U-100% 15N] SH1003, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide100% D2O0.26.5ambient293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2BrukerAVANCE III850
NMR Refinement
MethodDetailsSoftware
simulated annealingXplor-nih-2.20 with HBDBNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number150
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe2008Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2collectionVNMR6.1CVarian
3collectionTopSpin2.1.3Bruker Biospin
4data analysisAutoStructure2.2.1Huang, Tejero, Powers and Montelione
5structure solutionX-PLOR NIH2.20Schwieters, Kuszewski, Tjandra and Clore
6refinementCNS1.2Brunger, Adams, Clore, Gros, Nilges and Read
7data analysisSparky3.113Goddard
8structure solutionPSVS1.3Bhattacharya and Montelione
9chemical shift assignmentAutoAssign2.30Zimmerman, Moseley, Kulikowski and Montelione
10structure solutionPdbStat5.1(PdbStat)-Roberto Tejero and Gaetano T. Montelione