2KI7 | pdb_00002ki7

The solution structure of RPP29-RPP21 complex from Pyrococcus furiosus

SOLUTION NMR

---

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-1, 1.5 mM Pfu RPP21-2, 10 mM TRIS-3, 10 mM potassium chloride-4, 0.3 mM Zinc chloride-5, 0.02 % sodium azide-6, 10 % [U-99.8% 2H] D2O-7, 90 % H2O-8, 3 mM DSS-9	90% H2O/10% D2O	0.047	5.8	ambient	328
2	2D 1H-15N HSQC	1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-18, 1.2 mM Pfu RPP29-19, 10 mM TRIS-20, 10 mM potassium chloride-21, 0.3 mM Zinc chloride-22, 0.02 % sodium azide-23, 90 % H2O-24, 10 % [U-99.8% 2H] D2O-25, 3 mM DSS-26	90% H2O/10% D2O	0.047	5.8	ambient	328
3	2D 1H-13C HSQC	1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-1, 1.5 mM Pfu RPP21-2, 10 mM TRIS-3, 10 mM potassium chloride-4, 0.3 mM Zinc chloride-5, 0.02 % sodium azide-6, 10 % [U-99.8% 2H] D2O-7, 90 % H2O-8, 3 mM DSS-9	90% H2O/10% D2O	0.047	5.8	ambient	328
4	2D 1H-13C HSQC	1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-18, 1.2 mM Pfu RPP29-19, 10 mM TRIS-20, 10 mM potassium chloride-21, 0.3 mM Zinc chloride-22, 0.02 % sodium azide-23, 90 % H2O-24, 10 % [U-99.8% 2H] D2O-25, 3 mM DSS-26	90% H2O/10% D2O	0.047	5.8	ambient	328
5	3D HNCO	1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-1, 1.5 mM Pfu RPP21-2, 10 mM TRIS-3, 10 mM potassium chloride-4, 0.3 mM Zinc chloride-5, 0.02 % sodium azide-6, 10 % [U-99.8% 2H] D2O-7, 90 % H2O-8, 3 mM DSS-9	90% H2O/10% D2O	0.047	5.8	ambient	328
6	3D HNCO	1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-18, 1.2 mM Pfu RPP29-19, 10 mM TRIS-20, 10 mM potassium chloride-21, 0.3 mM Zinc chloride-22, 0.02 % sodium azide-23, 90 % H2O-24, 10 % [U-99.8% 2H] D2O-25, 3 mM DSS-26	90% H2O/10% D2O	0.047	5.8	ambient	328
7	3D HNCACB	1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-1, 1.5 mM Pfu RPP21-2, 10 mM TRIS-3, 10 mM potassium chloride-4, 0.3 mM Zinc chloride-5, 0.02 % sodium azide-6, 10 % [U-99.8% 2H] D2O-7, 90 % H2O-8, 3 mM DSS-9	90% H2O/10% D2O	0.047	5.8	ambient	328
8	3D HNCACB	1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-18, 1.2 mM Pfu RPP29-19, 10 mM TRIS-20, 10 mM potassium chloride-21, 0.3 mM Zinc chloride-22, 0.02 % sodium azide-23, 90 % H2O-24, 10 % [U-99.8% 2H] D2O-25, 3 mM DSS-26	90% H2O/10% D2O	0.047	5.8	ambient	328
9	3D CBCA(CO)NH	1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-1, 1.5 mM Pfu RPP21-2, 10 mM TRIS-3, 10 mM potassium chloride-4, 0.3 mM Zinc chloride-5, 0.02 % sodium azide-6, 10 % [U-99.8% 2H] D2O-7, 90 % H2O-8, 3 mM DSS-9	90% H2O/10% D2O	0.047	5.8	ambient	328
10	3D CBCA(CO)NH	1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-18, 1.2 mM Pfu RPP29-19, 10 mM TRIS-20, 10 mM potassium chloride-21, 0.3 mM Zinc chloride-22, 0.02 % sodium azide-23, 90 % H2O-24, 10 % [U-99.8% 2H] D2O-25, 3 mM DSS-26	90% H2O/10% D2O	0.047	5.8	ambient	328
11	3D C(CO)NH TOCSY	1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-1, 1.5 mM Pfu RPP21-2, 10 mM TRIS-3, 10 mM potassium chloride-4, 0.3 mM Zinc chloride-5, 0.02 % sodium azide-6, 10 % [U-99.8% 2H] D2O-7, 90 % H2O-8, 3 mM DSS-9	90% H2O/10% D2O	0.047	5.8	ambient	328
12	3D C(CO)NH TOCSY	1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-18, 1.2 mM Pfu RPP29-19, 10 mM TRIS-20, 10 mM potassium chloride-21, 0.3 mM Zinc chloride-22, 0.02 % sodium azide-23, 90 % H2O-24, 10 % [U-99.8% 2H] D2O-25, 3 mM DSS-26	90% H2O/10% D2O	0.047	5.8	ambient	328
13	3D H(C)(CO)NH TOCSY	1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-1, 1.5 mM Pfu RPP21-2, 10 mM TRIS-3, 10 mM potassium chloride-4, 0.3 mM Zinc chloride-5, 0.02 % sodium azide-6, 10 % [U-99.8% 2H] D2O-7, 90 % H2O-8, 3 mM DSS-9	90% H2O/10% D2O	0.047	5.8	ambient	328
14	3D H(C)(CO)NH TOCSY	1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-18, 1.2 mM Pfu RPP29-19, 10 mM TRIS-20, 10 mM potassium chloride-21, 0.3 mM Zinc chloride-22, 0.02 % sodium azide-23, 90 % H2O-24, 10 % [U-99.8% 2H] D2O-25, 3 mM DSS-26	90% H2O/10% D2O	0.047	5.8	ambient	328
15	3D 1H-15N NOESY	1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-1, 1.5 mM Pfu RPP21-2, 10 mM TRIS-3, 10 mM potassium chloride-4, 0.3 mM Zinc chloride-5, 0.02 % sodium azide-6, 10 % [U-99.8% 2H] D2O-7, 90 % H2O-8, 3 mM DSS-9	90% H2O/10% D2O	0.047	5.8	ambient	328
16	3D 1H-15N NOESY	1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-18, 1.2 mM Pfu RPP29-19, 10 mM TRIS-20, 10 mM potassium chloride-21, 0.3 mM Zinc chloride-22, 0.02 % sodium azide-23, 90 % H2O-24, 10 % [U-99.8% 2H] D2O-25, 3 mM DSS-26	90% H2O/10% D2O	0.047	5.8	ambient	328
17	3D 1H-13C NOESY	1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-10, 1.5 mM Pfu RPP21-11, 10 mM TRIS-12, 10 mM potassium chloride-13, 0.3 % Zinc chloride-14, 0.02 % sodium azide-15, 100 % [U-99.8% 2H] D2O-16, 3 mM DSS-17	100% D2O	0.047		ambient	328
18	3D 1H-13C NOESY	1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-27, 1.2 mM Pfu RPP29-28, 10 mM TRIS-29, 10 mM potassium chloride-30, 0.3 mM Zinc chloride-31, 0.02 % sodium azide-32, 100 % [U-99.8% 2H] D2O-33, 3 mM DSS-34	100% D2O	0.047		ambient	328
19	3D 13C-filtered/edited NOESY	1.25 mM [U-100% 13C; U-100% 15N] Pfu RPP29-10, 1.5 mM Pfu RPP21-11, 10 mM TRIS-12, 10 mM potassium chloride-13, 0.3 % Zinc chloride-14, 0.02 % sodium azide-15, 100 % [U-99.8% 2H] D2O-16, 3 mM DSS-17	100% D2O	0.047		ambient	328
20	3D 13C-filtered/edited NOESY	1 mM [U-100% 13C; U-100% 15N] Pfu RPP21-27, 1.2 mM Pfu RPP29-28, 10 mM TRIS-29, 10 mM potassium chloride-30, 0.3 mM Zinc chloride-31, 0.02 % sodium azide-32, 100 % [U-99.8% 2H] D2O-33, 3 mM DSS-34	100% D2O	0.047		ambient	328

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	DMX	600
2	Bruker	DRX	800

NMR Refinement
Method	Details	Software
simulated annealing		NMRDraw

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRDraw		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	chemical shift calculation	NMRDraw		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	peak picking	NMRView		Johnson, One Moon Scientific
4	data analysis	NMRView		Johnson, One Moon Scientific
5	collection	XwinNMR		Bruker Biospin
6	chemical shift assignment	CARA		Keller R., Wuthrich K.
7	data analysis	CARA		Keller R., Wuthrich K.
8	data analysis	SANE		Duggan, Legge, Dyson & Wright
9	data analysis	TALOS		Cornilescu, Delaglio and Bax
10	structure solution	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
11	data analysis	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
12	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore