☰ Navigation Tabs
Solution structure of full-length SlyD from E.coli
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT 90% H2O/10% D2O 100 7.25 ambient 298 2 2D 1H-13C HSQC 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT 90% H2O/10% D2O 100 7.25 ambient 298 3 3D HNCA 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT 90% H2O/10% D2O 100 7.25 ambient 298 4 3D HN(CO)CA 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT 90% H2O/10% D2O 100 7.25 ambient 298 5 3D HNCACB 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT 90% H2O/10% D2O 100 7.25 ambient 298 6 3D CBCA(CO)NH 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT 90% H2O/10% D2O 100 7.25 ambient 298 7 3D HCCH-TOCSY 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT 90% H2O/10% D2O 100 7.25 ambient 298 8 3D HNCO 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT 90% H2O/10% D2O 100 7.25 ambient 298 9 3D 1H-15N NOESY 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT 90% H2O/10% D2O 100 7.25 ambient 298 10 3D 1H-13C NOESY 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT 90% H2O/10% D2O 100 7.25 ambient 298 11 3D HNHA 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT 90% H2O/10% D2O 100 7.25 ambient 298 12 3D HN(CO)CA 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT 90% H2O/10% D2O 100 7.25 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 700 2 Bruker AVANCE 600 3 Varian INOVA 800 4 Varian INOVA 600
NMR Refinement Method Details Software torsion angle dynamics X-PLOR
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution X-PLOR Brunger 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis TALOS Cornilescu, Delaglio and Bax 4 data analysis MOLMOL Koradi, Billeter and Wuthrich 5 data analysis XEASY Bartels et al. 6 chemical shift assignment XEASY Bartels et al. 7 peak picking XEASY Bartels et al. 8 data analysis ProcheckNMR Laskowski and MacArthur 9 collection VNMR Varian 10 collection TopSpin Bruker Biospin 11 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 12 refinement X-PLOR Brunger