2KFW
Solution structure of full-length SlyD from E.coli
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT | 90% H2O/10% D2O | 100 | 7.25 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT | 90% H2O/10% D2O | 100 | 7.25 | ambient | 298 | |
3 | 3D HNCA | 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT | 90% H2O/10% D2O | 100 | 7.25 | ambient | 298 | |
4 | 3D HN(CO)CA | 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT | 90% H2O/10% D2O | 100 | 7.25 | ambient | 298 | |
5 | 3D HNCACB | 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT | 90% H2O/10% D2O | 100 | 7.25 | ambient | 298 | |
6 | 3D CBCA(CO)NH | 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT | 90% H2O/10% D2O | 100 | 7.25 | ambient | 298 | |
7 | 3D HCCH-TOCSY | 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT | 90% H2O/10% D2O | 100 | 7.25 | ambient | 298 | |
8 | 3D HNCO | 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT | 90% H2O/10% D2O | 100 | 7.25 | ambient | 298 | |
9 | 3D 1H-15N NOESY | 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT | 90% H2O/10% D2O | 100 | 7.25 | ambient | 298 | |
10 | 3D 1H-13C NOESY | 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT | 90% H2O/10% D2O | 100 | 7.25 | ambient | 298 | |
11 | 3D HNHA | 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT | 90% H2O/10% D2O | 100 | 7.25 | ambient | 298 | |
12 | 3D HN(CO)CA | 20 mM TRIS, 100 mM potassium chloride, 1 mM DTT | 90% H2O/10% D2O | 100 | 7.25 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
2 | Bruker | AVANCE | 600 |
3 | Varian | INOVA | 800 |
4 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | X-PLOR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR | Brunger | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
4 | data analysis | MOLMOL | Koradi, Billeter and Wuthrich | |
5 | data analysis | XEASY | Bartels et al. | |
6 | chemical shift assignment | XEASY | Bartels et al. | |
7 | peak picking | XEASY | Bartels et al. | |
8 | data analysis | ProcheckNMR | Laskowski and MacArthur | |
9 | collection | VNMR | Varian | |
10 | collection | TopSpin | Bruker Biospin | |
11 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
12 | refinement | X-PLOR | Brunger |