Experiment: 2KDO

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D HNCACB	0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] SBDS-1, 1.0 mM no DTT-2, 50 mM no sodium phosphate-3, 20 mM no sodium chloride-4, 0.05 % no sodium azide-5	90% H2O/10% D2O	0.071	7.2	ambient atm	293
2	3D CBCA(CO)NH	0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] SBDS-1, 1.0 mM no DTT-2, 50 mM no sodium phosphate-3, 20 mM no sodium chloride-4, 0.05 % no sodium azide-5	90% H2O/10% D2O	0.071	7.2	ambient atm	293
3	3D HNCA	0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] SBDS-1, 1.0 mM no DTT-2, 50 mM no sodium phosphate-3, 20 mM no sodium chloride-4, 0.05 % no sodium azide-5	90% H2O/10% D2O	0.071	7.2	ambient atm	293
4	3D HN(CO)CA	0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] SBDS-1, 1.0 mM no DTT-2, 50 mM no sodium phosphate-3, 20 mM no sodium chloride-4, 0.05 % no sodium azide-5	90% H2O/10% D2O	0.071	7.2	ambient atm	293
5	3D HNCO	0.5 mM [U-100% 13C; U-100% 15N; U-80% 2H] SBDS-1, 1.0 mM no DTT-2, 50 mM no sodium phosphate-3, 20 mM no sodium chloride-4, 0.05 % no sodium azide-5	90% H2O/10% D2O	0.071	7.2	ambient atm	293
6	3D 1H-15N NOESY	0.5 mM [U-99% 13C; U-99% 15N] SBDS-6, 1.0 mM no DTT-7, 50 mM no sodium phosphate-8, 20 mM no sodium chloride-9, 0.05 % no sodium azide-10	90% H2O/10% D2O	0.071	7.2	ambient atm	293
7	3D HCCH-TOCSY	0.5 mM [U-99% 13C; U-99% 15N] SBDS-11, 1.0 mM no DTT-12, 50 mM no sodium phosphate-13, 20 mM no sodium chloride-14, 0.05 % no sodium azide-15	100% D2O	0.071	7.2	ambient atm	293
8	3D 1H-13C NOESY	0.5 mM [U-99% 13C; U-99% 15N] SBDS-11, 1.0 mM no DTT-12, 50 mM no sodium phosphate-13, 20 mM no sodium chloride-14, 0.05 % no sodium azide-15	100% D2O	0.071	7.2	ambient atm	293
9	3D 1H-15N TOCSY	0.5 mM [U-99% 13C; U-99% 15N] SBDS-6, 1.0 mM no DTT-7, 50 mM no sodium phosphate-8, 20 mM no sodium chloride-9, 0.05 % no sodium azide-10	90% H2O/10% D2O	0.071	7.2	ambient atm	293
10	2D 1H-15N HSQC_T1	0.5 mM [U-99% 13C; U-99% 15N] SBDS-6, 1.0 mM no DTT-7, 50 mM no sodium phosphate-8, 20 mM no sodium chloride-9, 0.05 % no sodium azide-10	90% H2O/10% D2O	0.071	7.2	ambient atm	293
11	2D 1H-15N HSQC_T1	0.5 mM [U-99% 13C; U-99% 15N] SBDS-6, 1.0 mM no DTT-7, 50 mM no sodium phosphate-8, 20 mM no sodium chloride-9, 0.05 % no sodium azide-10	90% H2O/10% D2O	0.071	7.2	ambient atm	293
12	2D 1H-15N HSQC_T2	0.5 mM [U-99% 13C; U-99% 15N] SBDS-6, 1.0 mM no DTT-7, 50 mM no sodium phosphate-8, 20 mM no sodium chloride-9, 0.05 % no sodium azide-10	90% H2O/10% D2O	0.071	7.2	ambient atm	293
13	2D 1H-15N HSQC_T2	0.5 mM [U-99% 13C; U-99% 15N] SBDS-6, 1.0 mM no DTT-7, 50 mM no sodium phosphate-8, 20 mM no sodium chloride-9, 0.05 % no sodium azide-10	90% H2O/10% D2O	0.071	7.2	ambient atm	293
14	2D 1H-15N HSQC_NOE	0.5 mM [U-99% 13C; U-99% 15N] SBDS-6, 1.0 mM no DTT-7, 50 mM no sodium phosphate-8, 20 mM no sodium chloride-9, 0.05 % no sodium azide-10	90% H2O/10% D2O	0.071	7.2	ambient atm	293
15	2D 1H-15N HSQC_NOE	0.5 mM [U-99% 13C; U-99% 15N] SBDS-6, 1.0 mM no DTT-7, 50 mM no sodium phosphate-8, 20 mM no sodium chloride-9, 0.05 % no sodium azide-10	90% H2O/10% D2O	0.071	7.2	ambient atm	293

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600
2	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
DGSA-distance geometry simulated annealing, torsion angle dynamics	B-FACTOR COLUMN STORES ADDITIONAL COORDINATE DIGITS	NMRPipe

NMR Ensemble Information
Conformer Selection Criteria	structures with the least restraint violations
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	chemical shift assignment	NMRView	5	Johnson, One Moon Scientific
3	peak picking	NMRView	5	Johnson, One Moon Scientific
4	structure solution	CYANA		Guntert, Mumenthaler and Wuthrich
5	geometry optimization	CYANA		Guntert, Mumenthaler and Wuthrich
6	structure solution	DYANA		Guntert, Braun and Wuthrich
7	geometry optimization	DYANA		Guntert, Braun and Wuthrich
8	data analysis	Insight II		Accelrys Software Inc.
9	data analysis	ProcheckNMR		Laskowski and MacArthur
10	refinement	CYANA	2.1	GUNTERT, P., ET AL
11	refinement	CNS	1.1	BRUNGER, A.T. ET AL

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.