2KCP | pdb_00002kcp

SOLUTION STRUCTURE OF 30S RIBOSOMAL PROTEIN S8E; FROM Methanothermobacter thermautotrophicus, NORTHEASTSTRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET Tr71d

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.94 mM [U-100% 13C; U-100% 15N] rps8e-1	95% H2O/5% D2O	n.a.	6.5	ambient	298
2	2D 1H-15N HSQC	0.94 mM [U-100% 13C; U-100% 15N] rps8e-1	95% H2O/5% D2O	n.a.	6.5	ambient	298
3	2D 1H-15N HSQC	0.94 mM [U-100% 13C; U-100% 15N] rps8e-1	95% H2O/5% D2O	n.a.	6.5	ambient	298
4	2D 1H-15N HSQC	1 mM [U-10% 13C; U-100% 15N] rps8e-2	95% H2O/5% D2O	n.a.	6.5	ambient	298
5	3D 1H-15N NOESY	0.94 mM [U-100% 13C; U-100% 15N] rps8e-1	95% H2O/5% D2O	n.a.	6.5	ambient	298
6	3D 1H-13C NOESY	0.94 mM [U-100% 13C; U-100% 15N] rps8e-1	95% H2O/5% D2O	n.a.	6.5	ambient	298
7	3D 1H-13C NOESY	0.94 mM [U-100% 13C; U-100% 15N] rps8e-3	100% D2O	n.a.	6.5	ambient	298
8	3D CBCA(CO)NH	0.94 mM [U-100% 13C; U-100% 15N] rps8e-1	95% H2O/5% D2O	n.a.	6.5	ambient	298
9	3D HNCACB	0.94 mM [U-100% 13C; U-100% 15N] rps8e-1	95% H2O/5% D2O	n.a.	6.5	ambient	298
10	3D HBHA(CO)NH	0.94 mM [U-100% 13C; U-100% 15N] rps8e-1	95% H2O/5% D2O	n.a.	6.5	ambient	298
11	3D HCCH-TOCSY	0.94 mM [U-100% 13C; U-100% 15N] rps8e-1	95% H2O/5% D2O	n.a.	6.5	ambient	298
12	2D 1H-13C HSQC	0.94 mM [U-100% 13C; U-100% 15N] rps8e-3	100% D2O	n.a.	6.5	ambient	298
13	2D 1H-13C HSQC	1 mM [U-10% 13C; U-100% 15N] rps8e-2	95% H2O/5% D2O	n.a.	6.5	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	800
2	Bruker	AVANCE	800
3	Varian	INOVA	600

NMR Refinement
Method	Details	Software
distance geometry, simulated annealing, molecular dynamics, torsion angle dynamics		CNS

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
2	structure solution	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
3	refinement	CYANA		Guntert, Mumenthaler and Wuthrich
4	structure solution	CYANA		Guntert, Mumenthaler and Wuthrich
5	geometry optimization	CYANA		Guntert, Mumenthaler and Wuthrich
6	peak picking	AutoStructure		Huang, Tejero, Powers and Montelione
7	refinement	AutoStructure		Huang, Tejero, Powers and Montelione
8	geometry optimization	AutoStructure		Huang, Tejero, Powers and Montelione
9	geometry optimization	PSVS		Bhattacharya and Montelione
10	chemical shift assignment	AutoAssign		Zimmerman, Moseley, Kulikowski and Montelione
11	chemical shift assignment	XEASY		Bartels et al.
12	data analysis	XEASY		Bartels et al.
13	peak picking	XEASY		Bartels et al.
14	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
15	collection	TopSpin		Bruker Biospin
16	collection	VnmrJ		Varian