2KC3
NMR solution structure of complete receptor binding domain of human apolipoprotein E
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Human apolipoprotein E N-terminal domain-1 | 95% H2O/5% D2O | 0.05 | 6.8 | ambient | 303 | |
2 | 3D HNCACB | 1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Human apolipoprotein E N-terminal domain-1 | 95% H2O/5% D2O | 0.05 | 6.8 | ambient | 303 | |
3 | 3D HN(CO)CA | 1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Human apolipoprotein E N-terminal domain-1 | 95% H2O/5% D2O | 0.05 | 6.8 | ambient | 303 | |
4 | 3D HN(COCA)CB | 1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Human apolipoprotein E N-terminal domain-1 | 95% H2O/5% D2O | 0.05 | 6.8 | ambient | 303 | |
5 | 3D HNCA | 1 mM [U-100% 13C; U-100% 15N; U-70% 2H] Human apolipoprotein E N-terminal domain-1 | 95% H2O/5% D2O | 0.05 | 6.8 | ambient | 303 | |
6 | 3D 1H-15N NOESY | 1 mM [U-100% 13C; U-100% 15N; U-30% 2H] Human apolipoprotein E N-terminal domain-2 | 95% H2O/5% D2O | 0.05 | 6.8 | ambient | 303 | |
7 | 3D C(CO)NH | 1 mM [U-100% 13C; U-100% 15N; U-30% 2H] Human apolipoprotein E N-terminal domain-2 | 95% H2O/5% D2O | 0.05 | 6.8 | ambient | 303 | |
8 | 3D H(CCO)NH | 1 mM [U-100% 13C; U-100% 15N; U-30% 2H] Human apolipoprotein E N-terminal domain-2 | 95% H2O/5% D2O | 0.05 | 6.8 | ambient | 303 | |
9 | 3D HCCH-TOCSY | 1 mM [U-100% 13C; U-100% 15N; U-30% 2H] Human apolipoprotein E N-terminal domain-2 | 95% H2O/5% D2O | 0.05 | 6.8 | ambient | 303 | |
10 | 4D 15N-13C NOESY | 1 mM [U-100% 13C; U-100% 15N; U-30% 2H] Human apolipoprotein E N-terminal domain-2 | 95% H2O/5% D2O | 0.05 | 6.8 | ambient | 303 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy and least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | geometry optimization | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | chemical shift assignment | PIPP | Garrett | |
5 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
6 | data analysis | ProcheckNMR | Laskowski and MacArthur | |
7 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |