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Structure, interaction, and real-time monitoring of the enzymatic reaction of wild type APOBEC3G
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 0.3mM [U-100% 13C; U-100% 15N] APOBEC3G-1 90% H2O/10% D2O 30 7.5 ambient 303 2 3D 1H-13C NOESY 0.3mM [U-100% 13C; U-100% 15N] APOBEC3G-1 90% H2O/10% D2O 30 7.5 ambient 303 3 2D 1H-15N HSQC 0.3mM [U-100% 13C; U-100% 15N] APOBEC3G-1 90% H2O/10% D2O 30 7.5 ambient 303 4 2D 1H-13C HSQC 0.3mM [U-100% 13C; U-100% 15N] APOBEC3G-1 90% H2O/10% D2O 30 7.5 ambient 303 5 3D CBCA(CO)NH 0.3mM [U-100% 13C; U-100% 15N] APOBEC3G-1 90% H2O/10% D2O 30 7.5 ambient 303 6 3D C(CO)NH 0.3mM [U-100% 13C; U-100% 15N] APOBEC3G-1 90% H2O/10% D2O 30 7.5 ambient 303 7 3D HNCO 0.3mM [U-100% 13C; U-100% 15N] APOBEC3G-1 90% H2O/10% D2O 30 7.5 ambient 303 8 3D HNCA 0.3mM [U-100% 13C; U-100% 15N] APOBEC3G-1 90% H2O/10% D2O 30 7.5 ambient 303 9 3D HNCACB 0.3mM [U-100% 13C; U-100% 15N] APOBEC3G-1 90% H2O/10% D2O 30 7.5 ambient 303 10 3D HN(CO)CA 0.3mM [U-100% 13C; U-100% 15N] APOBEC3G-1 90% H2O/10% D2O 30 7.5 ambient 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 800 2 Bruker DRX 600
NMR Refinement Method Details Software simulated annealing NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe 97.027.12.56 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 data analysis NMRDraw 2.4 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 collection XwinNMR 3.5 Bruker Biospin 4 data analysis KUJIRA 0.9820 Naohiro Kobayashi 5 chemical shift assignment KUJIRA 0.9820 Naohiro Kobayashi 6 structure solution X-PLOR NIH 2.20 Schwieters, Kuszewski, Tjandra and Clore 7 refinement X-PLOR NIH 2.20 Schwieters, Kuszewski, Tjandra and Clore