Experiment: 2KAP

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	1D 1H SPECTRUM	1mM DLC1-SAM, 50mM sodium phosphate, 3mM DTT, 5% [U-100% 2H] D2O	95% H2O/5% D2O		6.8	ambient	298
2	2D 1H-15N HSQC	1mM [U-100% 15N] DLC1-SAM, 50mM sodium phosphate, 3mM DTT, 5% [U-100% 2H] D2O	95% H2O/5% D2O		6.8	ambient	298
3	2D 1H-13C HSQC	1mM [U-100% 13C; U-100% 15N] DLC1-SAM, 50mM sodium phosphate, 3mM DTT, 5% [U-100% 2H] D2O	95% H2O/5% D2O		6.8	ambient	298
4	2D DQF-COSY	1mM DLC1-SAM, 50mM sodium phosphate, 3mM DTT, 100 % D2O	100% D2O		6.8	ambient	298
5	2D 1H-1H NOESY	1mM DLC1-SAM, 50mM sodium phosphate, 3mM DTT, 100 % D2O	100% D2O		6.8	ambient	298
6	2D 1H-1H TOCSY	1mM DLC1-SAM, 50mM sodium phosphate, 3mM DTT, 100 % D2O	100% D2O		6.8	ambient	298
7	3D CBCA(CO)NH	1mM [U-100% 13C; U-100% 15N] DLC1-SAM, 50mM sodium phosphate, 3mM DTT, 5% [U-100% 2H] D2O	95% H2O/5% D2O		6.8	ambient	298
8	3D HNCACB	1mM [U-100% 13C; U-100% 15N] DLC1-SAM, 50mM sodium phosphate, 3mM DTT, 5% [U-100% 2H] D2O	95% H2O/5% D2O		6.8	ambient	298
9	3D HCCH-TOCSY	1mM [U-100% 13C; U-100% 15N] DLC1-SAM, 50mM sodium phosphate, 3mM DTT, 5% [U-100% 2H] D2O	95% H2O/5% D2O		6.8	ambient	298
10	3D 1H-15N NOESY	1mM [U-100% 15N] DLC1-SAM, 50mM sodium phosphate, 3mM DTT, 5% [U-100% 2H] D2O	95% H2O/5% D2O		6.8	ambient	298
11	3D 1H-15N TOCSY	1mM [U-100% 15N] DLC1-SAM, 50mM sodium phosphate, 3mM DTT, 5% [U-100% 2H] D2O	95% H2O/5% D2O		6.8	ambient	298
12	3D 1H-13C NOESY	1mM [U-100% 13C; U-100% 15N] DLC1-SAM, 50mM sodium phosphate, 3mM DTT, 100% D2O	100% D2O		6.8	ambient	298
13	3D H(CCO)NH	1mM [U-100% 13C; U-100% 15N] DLC1-SAM, 50mM sodium phosphate, 3mM DTT, 5% [U-100% 2H] D2O	95% H2O/5% D2O		6.8	ambient	298
14	3D CC(CO)NH	1mM [U-100% 13C; U-100% 15N] DLC1-SAM, 50mM sodium phosphate, 3mM DTT, 5% [U-100% 2H] D2O	95% H2O/5% D2O		6.8	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	500

NMR Refinement
Method	Details	Software
molecular dynamics		Amber

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	geometry optimization	Amber		Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm
2	structure solution	CYANA		Guntert, Mumenthaler and Wuthrich
3	graphic display	MOLMOL		Koradi, Billeter and Wuthrich
4	processing	NMRDraw		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6	chemical shift assignment	NMRView		Johnson, One Moon Scientific
7	chemical shift calculation	NMRView		Johnson, One Moon Scientific
8	data analysis	NMRView		Johnson, One Moon Scientific
9	peak picking	NMRView		Johnson, One Moon Scientific
10	structure validation	ProcheckNMR		Laskowski and MacArthur
11	refinement	TALOS		Cornilescu, Delaglio and Bax
12	collection	XwinNMR		Bruker Biospin

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.