2K8G

Solution structure of RRM2 domain of PABP1


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-98% 13C; U-98% 15N] PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT90% H2O/10% D2O0.046.1ambient303
22D 1H-13C HSQC1 mM [U-98% 13C; U-98% 15N] PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT90% H2O/10% D2O0.046.1ambient303
33D CBCA(CO)NH1 mM [U-98% 13C; U-98% 15N] PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT90% H2O/10% D2O0.046.1ambient303
43D HNCACB1 mM [U-98% 13C; U-98% 15N] PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT90% H2O/10% D2O0.046.1ambient303
53D HNCO1 mM [U-98% 13C; U-98% 15N] PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT90% H2O/10% D2O0.046.1ambient303
63D HCCH-TOCSY1 mM [U-98% 13C; U-98% 15N] PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT90% H2O/10% D2O0.046.1ambient303
73D 1H-13C NOESY1 mM [U-98% 13C; U-98% 15N] PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT90% H2O/10% D2O0.046.1ambient303
83D 1H-15N NOESY1 mM [U-98% 15N] PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT90% H2O/10% D2O0.046.1ambient303
93D 1H-15N TOCSY1 mM [U-98% 15N] PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT90% H2O/10% D2O0.046.1ambient303
102D 1H-1H NOESY1 mM PABP1, 20 mM sodium chloride, 20 mM sodium phosphate, 1 mM DTT100% D2O0.046.1ambient303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
simulated annealing, molecular dynamicsTopSpin
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number25
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin2.1Bruker Biospin
2processingTopSpin2.1Bruker Biospin
3structure solutionCYANA2.0Guntert, Mumenthaler and Wuthrich
4structure solutionARIA1.3Linge, O'Donoghue and Nilges
5refinementARIA1.3Linge, O'Donoghue and Nilges
6data analysisCCPN_Analysis1Vranken, Boucher, Stevens, Fogh, Laue
7chemical shift assignmentCCPN_Analysis1Vranken, Boucher, Stevens, Fogh, Laue
8refinementCNS1.1Brunger, Adams, Clore, Gros, Nilges and Read
9data analysisTALOSCornilescu, Delaglio and Bax