2K6U
The Solution Structure of a Conformationally Restricted Fully Active Derivative of the Human Relaxin-like Factor (RLF)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D DQF-COSY | 1.2 mM RLF_crosslinked; sodium acetate | 100% D2O | 308 | ||||
2 | 2D 1H-1H TOCSY | 1.2 mM RLF_crosslinked; sodium acetate | 100% D2O | 308 | ||||
3 | 2D 1H-1H TOCSY | 1.2 mM RLF_crosslinked; sodium acetate | 100% D2O | 308 | ||||
4 | 2D 1H-13C HSQC | 1.2 mM RLF_crosslinked; sodium acetate | 100% D2O | 308 | ||||
5 | 2D 1H-1H NOESY | 1.2 mM RLF_crosslinked; sodium acetate | 100% D2O | 308 | ||||
6 | 2D 1H-1H TOCSY | 1.2 mM RLF_crosslinked; sodium acetate | 92% H2O/8% D2O | 5.0 | 308 | |||
7 | 2D 1H-1H NOESY | 1.2 mM RLF_crosslinked; sodium acetate | 92% H2O/8% D2O | 5.0 | 308 | |||
8 | 2D 1H-1H NOESY | 1.2 mM RLF_crosslinked; sodium acetate | 92% H2O/8% D2O | 5.0 | 303 | |||
9 | 2D 1H-1H NOESY | 1.2 mM RLF_crosslinked; sodium acetate | 92% H2O/8% D2O | 5.0 | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 800 |
2 | Varian | INOVA | 500 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics, simulated annealing | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | CNS | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |
2 | refinement | CNS | 1.1 | Brunger, Adams, Clore, Gros, Nilges and Read |
3 | refinement | ARIA | 2.1 | Linge, O'Donoghue and Nilges |
4 | structure solution | ARIA | 2.1 | Linge, O'Donoghue and Nilges |
5 | noe assignment | ARIA | 2.1 | Linge, O'Donoghue and Nilges |
6 | peak picking | Sparky | 3.110 | Goddard |
7 | chemical shift assignment | Sparky | 3.110 | Goddard |
8 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
9 | bond angle prediction | PREDITOR | Wishart |