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Solution structure of the C-terminal N-RNA binding domain of the Vesicular Stomatitis Virus Phosphoprotein
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D HNCACB 1.2 mM [U-100% 13C; U-100% 15N] protein, 90% H2O, 10% D2O 90% H2O/10% D2O 7.5 ambient 298 2 4D HC(CCO)NH 1.2 mM [U-100% 13C; U-100% 15N] protein, 90% H2O, 10% D2O 90% H2O/10% D2O 7.5 ambient 298 3 2D (HB)CB(CGCDCE)HE/(HB)CB(CGCD)HD 1.2 mM [U-100% 13C; U-100% 15N] protein, 90% H2O, 10% D2O 90% H2O/10% D2O 7.5 ambient 298 4 3D 15N NOESY-HSQC 1.2 mM [U-100% 13C; U-100% 15N] protein, 90% H2O, 10% D2O 90% H2O/10% D2O 7.5 ambient 298 5 3D aliphatic/aromatic 13C NOESY-HSQC 1.2 mM [U-100% 13C; U-100% 15N] protein, 90% H2O, 10% D2O 90% H2O/10% D2O 7.5 ambient 298 6 3D methyl selective 13C NOESY-HSQC 1.2 mM [U-100% 13C; U-100% 15N] protein, 90% H2O, 10% D2O 90% H2O/10% D2O 7.5 ambient 298 7 3D BEST HNCO/HNCOCA 1.2 mM [U-100% 13C; U-100% 15N] protein, 90% H2O, 10% D2O 90% H2O/10% D2O 7.5 ambient 298 8 R1, R2(CPMG 1H-15N Het NOE 1.2 mM [U-100% 13C; U-100% 15N] protein, 90% H2O, 10% D2O 90% H2O/10% D2O 7.5 ambient 298 9 3D BEST HNCO/HNCOCA 1.2 mM [U-100% 13C; U-100% 15N] protein, 90% H2O, 10% D2O 90% H2O/10% D2O 7.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600 2 Varian INOVA 800
NMR Refinement Method Details Software simulated annealing Atnos-candid using CYANA, then CNS interfaced to the program Sculptor for rdc refinement CNS
NMR Ensemble Information Conformer Selection Criteria 20 structures for lowest energy Conformers Calculated Total Number 500 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS