2K36

Structure ensemble Backbone and side-chain 1H, 13C, and 15N Chemical Shift Assignments, 1H-15N RDCs and 1H-1H nOe restraints for protein K7 from the Vaccinia virus


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.8 mM [U-15N] K7D8, 10 mM sodium phosphate, 100 mM sodium chloride, 10 mM DTT, 0.1 mM DSS90% H2O/10% D2O122.57.0ambient298
22D 1H-13C HSQC0.8 mM [U-13C; U-15N] K7D8, 10 mM sodium phosphate, 100 mM sodium chloride, 10 mM DTT, 0.1 mM DSS90% H2O/10% D2O122.57.0ambient298
33D HNCA0.8 mM [U-13C; U-15N] K7D8, 10 mM sodium phosphate, 100 mM sodium chloride, 10 mM DTT, 0.1 mM DSS90% H2O/10% D2O122.57.0ambient298
43D HN(CO)CA0.8 mM [U-13C; U-15N] K7D8, 10 mM sodium phosphate, 100 mM sodium chloride, 10 mM DTT, 0.1 mM DSS90% H2O/10% D2O122.57.0ambient298
53D CBCA(CO)NH0.8 mM [U-13C; U-15N] K7D8, 10 mM sodium phosphate, 100 mM sodium chloride, 10 mM DTT, 0.1 mM DSS90% H2O/10% D2O122.57.0ambient298
63D HNCO0.8 mM [U-13C; U-15N] K7D8, 10 mM sodium phosphate, 100 mM sodium chloride, 10 mM DTT, 0.1 mM DSS90% H2O/10% D2O122.57.0ambient298
73D HNHA0.8 mM [U-13C; U-15N] K7D8, 10 mM sodium phosphate, 100 mM sodium chloride, 10 mM DTT, 0.1 mM DSS90% H2O/10% D2O122.57.0ambient298
83D 1H-15N NOESY0.8 mM [U-15N] K7D8, 10 mM sodium phosphate, 100 mM sodium chloride, 10 mM DTT, 0.1 mM DSS90% H2O/10% D2O122.57.0ambient298
93D CBCA(CO)NH0.8 mM [U-13C; U-15N] K7D8, 10 mM sodium phosphate, 100 mM sodium chloride, 10 mM DTT, 0.1 mM DSS90% H2O/10% D2O122.57.0ambient298
102D 1H-13C constant time aromatic selected HSQC0.8 mM [U-13C; U-15N] K7D8, 10 mM sodium phosphate, 100 mM sodium chloride, 10 mM DTT, 0.1 mM DSS90% H2O/10% D2O122.57.0ambient298
113D HCCH-TOCSY0.8 mM [U-13C; U-15N] K7D8, 10 mM sodium phosphate, 100 mM sodium chloride, 10 mM DTT, 0.1 mM DSS90% H2O/10% D2O122.57.0ambient298
123D HCCH-TOCSY0.8 mM [U-13C; U-15N] K7D8, 10 mM sodium phosphate, 100 mM sodium chloride, 10 mM DTT, 0.1 mM DSS90% H2O/10% D2O122.57.0ambient298
132D HB(CBCGCD)HD0.8 mM [U-13C; U-15N] K7D8, 10 mM sodium phosphate, 100 mM sodium chloride, 10 mM DTT, 0.1 mM DSS90% H2O/10% D2O122.57.0ambient298
142D HB(CBCGCDCE)HE0.8 mM [U-13C; U-15N] K7D8, 10 mM sodium phosphate, 100 mM sodium chloride, 10 mM DTT, 0.1 mM DSS90% H2O/10% D2O122.57.0ambient298
153D 1H-13C NOESY0.8 mM [U-13C; U-15N] K7D8, 10 mM sodium phosphate, 100 mM sodium chloride, 10 mM DTT, 0.1 mM DSS90% H2O/10% D2O122.57.0ambient298
162D j modulated 1H-15N HSQC0.8 mM [U-15N] K7D8, 10 mM sodium phosphate, 100 mM sodium chloride, 10 mM DTT, 0.1 mM DSS90% H2O/10% D2O122.57.0ambient298
172D 1H-(13C)-1H aromatic optimised 13C filtered (HSQC) NOESY0.8 mM [U-13C; U-15N] K7D8, 10 mM sodium phosphate, 100 mM sodium chloride, 10 mM DTT, 0.1 mM DSS90% H2O/10% D2O122.57.0ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA750
2VarianINOVA600
3VarianINOVA500
NMR Refinement
MethodDetailsSoftware
simulated annealing, simulated annealingPASD/MARVIN with TALOS restraints with p>= 0.9 carried over to Aria 2.1 refinement calculation, Aria 2.1 with TALOS nOe and RDC (VEAN/SANI) restraints All cooling steps exended by a factor of 4 from defaultsVNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy (tangled structures excluded)
Conformers Calculated Total Number500
Conformers Submitted Total Number15
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsThe structure was determined using a combination of TALOS dihedral, 1H-1H nOe and residual dipolar coupling restraints
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMR6.1cVarian
2processingNMRPipe2.5 Rev 2006.184.15.37Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3data analysisccpn_analysis1.0.9-1.0.15CCPN
4structure solutionccpn_analysis1.0.9-1.0.15CCPN
5structure solutionX-PLOR NIH2.17Schwieters, Kuszewski, Tjandra and Clore
6refinementARIA2.1Linge, O'Donoghue and Nilges
7data analysisNMRView5.22Johnson, One Moon Scientific