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Solution Structure of the Apo C terminal domain of Lethocerus troponin C isoform F1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.4 mM [U-99% 15N] protein, 100 mM sodium chloride, 20 mM TRIS 90% H2O/10% D2O 0.1 6.8 ambient atm 298 2 2D 1H-13C HSQC 0.4 mM [U-99% 13C; U-99% 15N] protein, 100 mM sodium chloride, 20 mM TRIS 90% H2O/10% D2O 0.1 6.8 ambient atm 298 3 3D 1H-15N NOESY 0.4 mM [U-99% 15N] protein, 100 mM sodium chloride, 20 mM TRIS 90% H2O/10% D2O 0.1 6.8 ambient atm 298 4 3D 1H-15N NOESY 0.4 mM [U-99% 15N] protein, 100 mM sodium chloride, 20 mM TRIS 90% H2O/10% D2O 0.1 6.8 ambient atm 288 5 2D 1H-15N HSQC 0.4 mM [U-99% 15N] protein, 100 mM sodium chloride, 20 mM TRIS 90% H2O/10% D2O 0.1 6.8 ambient atm 288 6 3D HCCH-TOCSY 0.4 mM [U-99% 13C; U-99% 15N] protein, 100 mM sodium chloride, 20 mM TRIS 90% H2O/10% D2O 0.1 6.8 ambient atm 298 7 3D 1H-13C NOESY 0.4 mM [U-99% 13C; U-99% 15N] protein, 100 mM sodium chloride, 20 mM TRIS 90% H2O/10% D2O 0.1 6.8 ambient atm 298 8 3D CBCA(CO)NH 0.4 mM [U-99% 13C; U-99% 15N] protein, 100 mM sodium chloride, 20 mM TRIS 90% H2O/10% D2O 0.1 6.8 ambient atm 298 9 3D HN(CO)CA 0.4 mM [U-99% 13C; U-99% 15N] protein, 100 mM sodium chloride, 20 mM TRIS 90% H2O/10% D2O 0.1 6.8 ambient atm 298 10 3D HNCACB 0.4 mM [U-99% 13C; U-99% 15N] protein, 100 mM sodium chloride, 20 mM TRIS 90% H2O/10% D2O 0.1 6.8 ambient atm 298 11 3D 1H-15N TOCSY 0.4 mM [U-99% 15N] protein, 100 mM sodium chloride, 20 mM TRIS 90% H2O/10% D2O 0.1 6.8 ambient atm 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 800 2 Varian INOVA 600
NMR Refinement Method Details Software simulated annealing, torsion angle dynamics the structure were refined by molecular dynamics simulation in water using Aria 1.2 ARIA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 20 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution ARIA 1.2 Linge, O'Donoghue and Nilges 2 refinement ARIA 1.2 Linge, O'Donoghue and Nilges 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 peak picking NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 5 chemical shift assignment XEASY Bartels et al. 6 peak picking XEASY Bartels et al. 7 collection VNMR Varian