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NMR structure of the UBA domain of p62 (SQSTM1)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-100% 15N] Sequestosome-1, 50 mM potassium phosphate, 50 mM sodium chloride 90% H2O/10% D2O 7 ambient atm 298 2 3D 1H-15N NOESY 1 mM [U-100% 15N] Sequestosome-1, 50 mM potassium phosphate, 50 mM sodium chloride 90% H2O/10% D2O 7 ambient atm 298 3 2D 1H-13C HSQC 1 mM [U-100% 13C; U-100% 15N] Sequestosome-1, 50 mM potassium phosphate, 50 mM sodium chloride 90% H2O/10% D2O 7 ambient atm 298 4 3D CBCA(CO)NH 1 mM [U-100% 13C; U-100% 15N] Sequestosome-1, 50 mM potassium phosphate, 50 mM sodium chloride 90% H2O/10% D2O 7 ambient atm 298 5 3D HNCACB 1 mM [U-100% 13C; U-100% 15N] Sequestosome-1, 50 mM potassium phosphate, 50 mM sodium chloride 90% H2O/10% D2O 7 ambient atm 298 6 3D HNCO 1 mM [U-100% 13C; U-100% 15N] Sequestosome-1, 50 mM potassium phosphate, 50 mM sodium chloride 90% H2O/10% D2O 7 ambient atm 298 7 3D HN(CA)CO 1 mM [U-100% 13C; U-100% 15N] Sequestosome-1, 50 mM potassium phosphate, 50 mM sodium chloride 90% H2O/10% D2O 7 ambient atm 298 8 3D HCCH-TOCSY 1 mM [U-100% 13C; U-100% 15N] Sequestosome-1, 50 mM potassium phosphate, 50 mM sodium chloride 90% H2O/10% D2O 7 ambient atm 298 9 3D 1H-13C NOESY 1 mM [U-100% 13C; U-100% 15N] Sequestosome-1, 50 mM potassium phosphate, 50 mM sodium chloride 90% H2O/10% D2O 7 ambient atm 298 10 3D 1H-15N TOCSY 1 mM [U-100% 15N] Sequestosome-1, 50 mM potassium phosphate, 50 mM sodium chloride 90% H2O/10% D2O 7 ambient atm 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 30 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution X-PLOR NIH 2.14 Schwieters, Kuszewski, Tjandra and Clore 2 data analysis TALOS Cornilescu, Delaglio and Bax 3 collection XwinNMR Bruker Biospin 4 processing XwinNMR Bruker Biospin 5 chemical shift assignment CcpNMR 1.0.10 CCPN 6 data analysis CcpNMR 1.0.10 CCPN 7 peak picking CcpNMR 1.0.10 CCPN 8 refinement X-PLOR NIH 2.14 Schwieters, Kuszewski, Tjandra and Clore