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NMR structure of the ARID domain from the histone H3K4 demethylase RBP2
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D HNCACB 0.4 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium phosphate, 100 mM sodium chloride 90% H2O/10% D2O ~200 mM salt 6.0 ambient 293 2 3D 1H-15N NOESY 0.4 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium phosphate, 100 mM sodium chloride 90% H2O/10% D2O ~200 mM salt 6.0 ambient 293 3 3D 1H-13C NOESY 0.4 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium phosphate, 100 mM sodium chloride 100% D2O ~200 mM salt 6.0 ambient 293 4 3D HNHA 0.4 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium phosphate, 100 mM sodium chloride 90% H2O/10% D2O ~200 mM salt 6.0 ambient 293 5 3D HNHB 0.4 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium phosphate, 100 mM sodium chloride 90% H2O/10% D2O ~200 mM salt 6.0 ambient 293 6 3D CBCA(CO)NH 0.4 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium phosphate, 100 mM sodium chloride 90% H2O/10% D2O ~200 mM salt 6.0 ambient 293 7 3D 1H-15N TOCSY 0.4 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium phosphate, 100 mM sodium chloride 90% H2O/10% D2O ~200 mM salt 6.0 ambient 293 8 3D HNCO 0.4 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium phosphate, 100 mM sodium chloride 90% H2O/10% D2O ~200 mM salt 6.0 ambient 293 9 3D HCCH-TOCSY 0.4 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium phosphate, 100 mM sodium chloride 100% D2O ~200 mM salt 6.0 ambient 293 10 3D HCCH-COSY 0.4 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium phosphate, 100 mM sodium chloride 100% D2O ~200 mM salt 6.0 ambient 293 11 3D HNCA 0.4 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium phosphate, 100 mM sodium chloride 90% H2O/10% D2O ~200 mM salt 6.0 ambient 293 12 3D HN(CO)CA 0.4 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium phosphate, 100 mM sodium chloride 90% H2O/10% D2O ~200 mM salt 6.0 ambient 293
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 800 2 Bruker DRX 600
NMR Refinement Method Details Software simulated annealing XwinNMR
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR 3.5 Bruker Biospin 2 structure calculation CNS Brunger, Adams, Clore, Gros, Nilges and Read 3 data analysis NMRView Johnson, One Moon Scientific 4 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 5 refinement CNS 1.1 Brunger, Adams, Clore, Gros, Nilges and Read