2JXA | pdb_00002jxa

Mouse Latrophilin-1 GPCR Gal_lectin domain in complex with Rhamnose

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1-2 mM [U-100% 15N] protein, 20 mM sodium phosphate, 0.1 mM DSS, 0.02 % sodium azide; 95% H2O/5% D2O	95% H2O/5% D2O	30	7	ambient	303
2	2D 1H-13C HSQC	1-2 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate, 0.1 mM DSS, 0.02 % sodium azide; 100% D2O	100% D2O	30	7	ambient	303
3	3D HNHA	1-2 mM [U-100% 15N] protein, 20 mM sodium phosphate, 0.1 mM DSS, 0.02 % sodium azide; 95% H2O/5% D2O	95% H2O/5% D2O	30	7	ambient	303
4	3D 1H-15N NOESY	1-2 mM [U-100% 15N] protein, 20 mM sodium phosphate, 0.1 mM DSS, 0.02 % sodium azide; 95% H2O/5% D2O	95% H2O/5% D2O	30	7	ambient	303
5	3D HNHB	1-2 mM [U-100% 15N] protein, 20 mM sodium phosphate, 0.1 mM DSS, 0.02 % sodium azide; 95% H2O/5% D2O	95% H2O/5% D2O	30	7	ambient	303
6	4D 13C/13C NOESY	1-2 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate, 0.1 mM DSS, 0.02 % sodium azide; 100% D2O	100% D2O	30	7	ambient	303
7	2D 13C methyl-carbonyl	1-2 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate, 0.1 mM DSS, 0.02 % sodium azide; 100% D2O	100% D2O	30	7	ambient	303
8	2D 13C methyl-nitrogen	1-2 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate, 0.1 mM DSS, 0.02 % sodium azide; 100% D2O	100% D2O	30	7	ambient	303
9	2D 13C methyl-ca	1-2 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate, 0.1 mM DSS, 0.02 % sodium azide; 100% D2O	100% D2O	30	7	ambient	303
10	15N IPAP-HSQC	1-2 mM [U-100% 15N] protein, 20 mM sodium phosphate, 0.1 mM DSS, 0.02 % sodium azide, 4 % PEG C12E5, 0.96 molecular ratio hexanol; 95% H2O/5% D2O	95% H2O/5% D2O	30	7	ambient	303
11	3D 1H-15N NOESY	1-2 mM [U-100% 15N] protein, 20 mM sodium phosphate, 0.1 mM DSS, 0.02 % sodium azide, 10 mM L-Rhamnose; 95% H2O/5% D2O	95% H2O/5% D2O	30	7	ambient	303
12	2D 13C-purged/13C-filtered NOESY	1-2 mM [U-100% 13C; U-100% 15N] protein, 20 mM sodium phosphate, 0.1 mM DSS, 0.02 % sodium azide, 10 mM L-Rhamnose; 100% D2O	100% D2O	30	7	ambient	303

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1			750
2			600
3			500
4			950

NMR Refinement
Method	Details	Software
simulated annealing	Simulated annealing in the presence of Rhamnose starting from average apo-protein coordinates	Omega

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	50
Conformers Submitted Total Number	25
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	Omega	Beta 6.0.3b2	GE/Bruker
2	processing	NMRPipe	2.4 Rev 2006.095.11.35	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	data analysis	PIPP	4.3.7	Garrett
4	peak picking	PIPP	4.3.7	Garrett
5	geometry optimization	X-PLOR NIH	2.17.0	Schwieters, Kuszewski, Tjandra, Clore
6	refinement	X-PLOR NIH	2.17.0	Schwieters, Kuszewski, Tjandra, Clore
7	structure solution	X-PLOR NIH	2.17.0	Schwieters, Kuszewski, Tjandra, Clore