2JWM
NMR spatial srtucture of ternary complex kalata B7/Mn2+/DPC micelle
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 1.6mM kalata B7 | 90% H2O/10% D2O | 0 | 2.6 | ambient | 303 | |
2 | 2D DQF-COSY | 1.6mM kalata B7 | 90% H2O/10% D2O | 0 | 2.6 | ambient | 303 | |
3 | 2D 1H-1H NOESY | 1.6mM kalata B7 | 90% H2O/10% D2O | 0 | 2.6 | ambient | 303 | |
4 | 1D 1H | 1.6mM kalata B7 | 90% H2O/10% D2O | 2.6 | 313 | |||
5 | 2D 1H-1H NOESY | 0.6mM kalata B7 | 90% H2O/10% D2O | 5.0 | 313 | |||
6 | 1D invertion-recovery | 0.6mM kalata B7 | 90% H2O/10% D2O | 5.0 | 313 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITY | 600 |
2 | Bruker | DRX | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | XEASY |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | XEASY | Bartels et al. | |
2 | peak picking | XEASY | Bartels et al. | |
3 | collection | VNMR | Varian | |
4 | processing | VNMR | Varian | |
5 | collection | XwinNMR | Bruker Biospin | |
6 | processing | XwinNMR | Bruker Biospin | |
7 | structure solution | CYANA | 1.1 | Guntert, Mumenthaler, Wuthrich |
8 | geometry optimization | CYANA | 1.1 | Guntert, Mumenthaler, Wuthrich |
9 | data analysis | CYANA | 1.1 | Guntert, Mumenthaler, Wuthrich |
10 | geometry optimization | MOLMOL | Koradi, Billeter, Wuthrich | |
11 | pictures preparation | MOLMOL | Koradi, Billeter, Wuthrich | |
12 | refinement | CYANA | 1.1 | Guntert, Mumenthaler, Wuthrich |