2JV3
Ets-1 PNT domain (29-138) NMR structure ensemble
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate | 90% H2O/10% D2O | 20 | 6.2 | ambient | 303 | |
2 | 2D 1H-13C HSQC | 200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate | 90% H2O/10% D2O | 20 | 6.2 | ambient | 303 | |
3 | 3D CCC-TOCSY-NNH | 200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate | 90% H2O/10% D2O | 20 | 6.2 | ambient | 303 | |
4 | 3D HCC-TOCSY-NNH | 200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate | 90% H2O/10% D2O | 20 | 6.2 | ambient | 303 | |
5 | 3D HCCH-TOCSY | 200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate | 90% H2O/10% D2O | 20 | 6.2 | ambient | 303 | |
6 | simultaneous 3D 15N-13C-NOESY | 200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate | 90% H2O/10% D2O | 20 | 6.2 | ambient | 303 | |
7 | simultaneous 3D 15N-13C-NOESY (methyl) | 200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate | 90% H2O/10% D2O | 20 | 6.2 | ambient | 303 | |
8 | 3D 1H-13C NOESY(aromatics) | 200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate | 90% H2O/10% D2O | 20 | 6.2 | ambient | 303 | |
9 | 2D 1H-15N IPAP HSQC | 200-300 uM [U-100% 15N] EtsPnt, sodium phosphate, Pf1 phage | 90% H2O/10% D2O | 20 | 6.2 | ambient | 303 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics, simulated annealing, MD/SA | 10000 steps @ 10000K, time step = 0.003fs, 10000K -> 1000 K in 5000 steps (first stage); 1000 K -> 50K in 4000 steps (second stage). Final 25 structures refined in Aria water box. | ARIA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 25 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
---|---|
Details | The structure was solved with a combination of NOESY and RDC data. |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | ARIA | 1.2 | Linge, O'Donoghue and Nilges |
2 | structure solution | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
3 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
4 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | data analysis | Sparky | 3.11 | Goddard |
6 | data analysis | MOLMOL | 2K2 | Koradi, Billeter and Wuthrich |
7 | data analysis | TALOS | 2003.027.13.05 | Cornilescu, Delaglio and Bax |
8 | structure solution | ProcheckNMR | 3.5.4 | Laskowski and MacArthur |
9 | data analysis | ProcheckNMR | 3.5.4 | Laskowski and MacArthur |