SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate | 90% H2O/10% D2O | 20 | 6.2 | ambient | 303 | |
| 2 | 2D 1H-13C HSQC | 200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate | 90% H2O/10% D2O | 20 | 6.2 | ambient | 303 | |
| 3 | 3D CCC-TOCSY-NNH | 200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate | 90% H2O/10% D2O | 20 | 6.2 | ambient | 303 | |
| 4 | 3D HCC-TOCSY-NNH | 200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate | 90% H2O/10% D2O | 20 | 6.2 | ambient | 303 | |
| 5 | 3D HCCH-TOCSY | 200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate | 90% H2O/10% D2O | 20 | 6.2 | ambient | 303 | |
| 6 | simultaneous 3D 15N-13C-NOESY | 200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate | 90% H2O/10% D2O | 20 | 6.2 | ambient | 303 | |
| 7 | simultaneous 3D 15N-13C-NOESY (methyl) | 200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate | 90% H2O/10% D2O | 20 | 6.2 | ambient | 303 | |
| 8 | 3D 1H-13C NOESY(aromatics) | 200-300 uM [U-100% 13C; U-100% 15N] EtsPnt, sodium phosphate | 90% H2O/10% D2O | 20 | 6.2 | ambient | 303 | |
| 9 | 2D 1H-15N IPAP HSQC | 200-300 uM [U-100% 15N] EtsPnt, sodium phosphate, Pf1 phage | 90% H2O/10% D2O | 20 | 6.2 | ambient | 303 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics, simulated annealing, MD/SA | 10000 steps @ 10000K, time step = 0.003fs, 10000K -> 1000 K in 5000 steps (first stage); 1000 K -> 50K in 4000 steps (second stage). Final 25 structures refined in Aria water box. | ARIA |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 25 |
| Representative Model | 1 (lowest energy) |
| Additional NMR Experimental Information | |
|---|---|
| Details | The structure was solved with a combination of NOESY and RDC data. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | ARIA | 1.2 | Linge, O'Donoghue and Nilges |
| 2 | structure solution | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
| 3 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
| 4 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 5 | data analysis | Sparky | 3.11 | Goddard |
| 6 | data analysis | MOLMOL | 2K2 | Koradi, Billeter and Wuthrich |
| 7 | data analysis | TALOS | 2003.027.13.05 | Cornilescu, Delaglio and Bax |
| 8 | structure solution | ProcheckNMR | 3.5.4 | Laskowski and MacArthur |
| 9 | data analysis | ProcheckNMR | 3.5.4 | Laskowski and MacArthur |
