2JUW | pdb_00002juw

NMR solution structure of homodimer protein SO_2176 from Shewanella oneidensis. Northeast Structural Genomics Consortium target SoR77

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium chloride, 20 mM ammonium acetate, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	298
2	2D 1H-13C HSQC	1 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium chloride, 20 mM ammonium acetate, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	298
3	3D 1H-15N NOESY	1 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium chloride, 20 mM ammonium acetate, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	298
4	3D 1H-13C NOESY	1 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium chloride, 20 mM ammonium acetate, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	298
5	4D 1H-13C NOESY	1 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium chloride, 20 mM ammonium acetate, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide	100% D2O	0.1	5.5	ambient	298
6	3D HNCO	1 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium chloride, 20 mM ammonium acetate, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	298
7	3D HNCACB	1 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium chloride, 20 mM ammonium acetate, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	298
8	3D CBCA(CO)NH	1 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium chloride, 20 mM ammonium acetate, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	298
9	3D H(CCO)NH	1 mM 50% NC labeled and 50% unlabeled protein mixed together to form mixed homodimer protein, 100 mM sodium chloride, 20 mM ammonium acetate, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	298
10	3D C(CO)NH	1 mM 50% NC labeled and 50% unlabeled protein mixed together to form mixed homodimer protein, 100 mM sodium chloride, 20 mM ammonium acetate, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	298
11	3D HBHA(CO)NH	1 mM 50% NC labeled and 50% unlabeled protein mixed together to form mixed homodimer protein, 100 mM sodium chloride, 20 mM ammonium acetate, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	298
12	3D HCCH-COSY	1 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium chloride, 20 mM ammonium acetate, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	298
13	2D 1H-13C HSQC	1 mM [U-5% 13C; U-100% 15N] protein, 100 mM sodium chloride, 20 mM ammonium acetate, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	298
14	2D 1H-15N HSQC	1 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium chloride, 20 mM ammonium acetate, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide	100% D2O	0.1	5.5	ambient	298
15	2D 1H-15N HSQC	1 mM 50% NC labeled and 50% unlabeled protein mixed together to form mixed homodimer protein, 100 mM sodium chloride, 20 mM ammonium acetate, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	298
16	2D 1H-15N HSQC	1 mM [U-5% 13C; U-100% 15N] protein, 100 mM sodium chloride, 20 mM ammonium acetate, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	298
17	3D CCH-TOCSY	1 mM 50% NC labeled and 50% unlabeled protein mixed together to form mixed homodimer protein, 100 mM sodium chloride, 20 mM ammonium acetate, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	298
18	3D 1H-13C NOESY	1 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium chloride, 20 mM ammonium acetate, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide	100% D2O	0.1	5.5	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	750
2	Varian	INOVA	600

NMR Refinement
Method	Details	Software
simulated annealing	Xplor-NIH	NMRPipe

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe	linux9	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	collection	VNMR	6.1C	Varian
3	data analysis	AutoStructure	2.1.1	Huang, Tejero, Powers and Montelione
4	structure solution	X-PLOR NIH	2.15.0	Schwieters, Kuszewski, Tjandra and Clore
5	refinement	CNS	1.1	Brunger, Adams, Clore, Gros, Nilges and Read
6	data analysis	Sparky	3.1	Goddard
7	structure validation	PSVS	1.3	Bhattacharya and Montelione
8	chemical shift assignment	AutoAssign	2.3.0	Zimmerman, Moseley, Kulikowski and Montelione

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 2JUW | pdb_00002juw

NMR solution structure of homodimer protein SO_2176 from Shewanella oneidensis. Northeast Structural Genomics Consortium target SoR77

2JUW | pdb_00002juw