2JTS

rhodanese with anions from E. coli


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D 1H-15N NOESY1 mM [U-13C; U-15N] rhodanese, 30 mM sodium phosphate, 40 mM DTT, 30 mM sodium chloride90% H2O/10% D2O0.066.3ambient298
23D 1H-13C NOESY1 mM [U-13C; U-15N] rhodanese, 30 mM sodium phosphate, 40 mM DTT, 30 mM sodium chloride90% H2O/10% D2O0.066.3ambient298
32D 1H-15N HSQC1 mM [U-13C; U-15N] rhodanese, 30 mM sodium phosphate, 40 mM DTT, 30 mM sodium chloride90% H2O/10% D2O0.066.3ambient298
43D CBCA(CO)NH1 mM [U-13C; U-15N] rhodanese, 30 mM sodium phosphate, 40 mM DTT, 30 mM sodium chloride90% H2O/10% D2O0.066.3ambient298
53D C(CO)NH1 mM [U-13C; U-15N] rhodanese, 30 mM sodium phosphate, 40 mM DTT, 30 mM sodium chloride90% H2O/10% D2O0.066.3ambient298
63D HNCO1 mM [U-13C; U-15N] rhodanese, 30 mM sodium phosphate, 40 mM DTT, 30 mM sodium chloride90% H2O/10% D2O0.066.3ambient298
73D HNCA1 mM [U-13C; U-15N] rhodanese, 30 mM sodium phosphate, 40 mM DTT, 30 mM sodium chloride90% H2O/10% D2O0.066.3ambient298
83D HNCACB1 mM [U-13C; U-15N] rhodanese, 30 mM sodium phosphate, 40 mM DTT, 30 mM sodium chloride90% H2O/10% D2O0.066.3ambient298
93D HBHA(CO)NH1 mM [U-13C; U-15N] rhodanese, 30 mM sodium phosphate, 40 mM DTT, 30 mM sodium chloride90% H2O/10% D2O0.066.3ambient298
103D HN(CO)CA1 mM [U-13C; U-15N] rhodanese, 30 mM sodium phosphate, 40 mM DTT, 30 mM sodium chloride90% H2O/10% D2O0.066.3ambient298
113D HCCH-TOCSY1 mM [U-13C; U-15N] rhodanese, 30 mM sodium phosphate, 40 mM DTT, 30 mM sodium chloride90% H2O/10% D2O0.066.3ambient298
123D 1H-15N TOCSY1 mM [U-13C; U-15N] rhodanese, 30 mM sodium phosphate, 40 mM DTT, 30 mM sodium chloride90% H2O/10% D2O0.066.3ambient298
133D HCCH-COSY1 mM [U-13C; U-15N] rhodanese, 30 mM sodium phosphate, 40 mM DTT, 30 mM sodium chloride90% H2O/10% D2O0.066.3ambient298
143D HCACO1 mM [U-13C; U-15N] rhodanese, 30 mM sodium phosphate, 40 mM DTT, 30 mM sodium chloride90% H2O/10% D2O0.066.3ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2BrukerAVANCE600
3BrukerAVANCE500
NMR Refinement
MethodDetailsSoftware
simulated annealing, molecular dynamicsAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number21
Representative Model1 (minimized average structure)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementAmber7Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, et.al.
2initial structure calculationCYANAGuntert, Mumenthaler and Wuthrich
3structure calculationDYANAGuntert, Braun and Wuthrich
4geometry optimizationMOLMOLKoradi, Billeter and Wuthrich
5processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6processingNMRViewJohnson, One Moon Scientific
7chemical shift calculationSANEDuggan, Legge, Dyson & Wright
8angle restraintsTALOSCornilescu, Delaglio and Bax