2JTG
Solution structure of the THAP-zinc finger of THAP1
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 1 mM THAP domain | 90% H2O/10% D2O | 10 | 6.8 | ambient | 296 | |
2 | 2D 1H-1H TOCSY | 1 mM THAP domain | 90% H2O/10% D2O | 10 | 6.8 | ambient | 296 | |
3 | 2D 1H-1H COSY | 1 mM THAP domain | 90% H2O/10% D2O | 10 | 6.8 | ambient | 296 | |
4 | 2D 1H-15N HSQC | 1 mM [U-15N] THAP domain | 90% H2O/10% D2O | 10 | 6.8 | ambient | 296 | |
5 | 3D 1H-15N NOESY | 1 mM [U-15N] THAP domain | 90% H2O/10% D2O | 10 | 6.8 | ambient | 296 | |
6 | 3D 1H-15N TOCSY | 1 mM [U-15N] THAP domain | 90% H2O/10% D2O | 10 | 6.8 | ambient | 296 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 700 |
3 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | XEASY |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 500 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | data analysis | XEASY | Bartels et al. | |
2 | data analysis | NMRView | Johnson, One Moon Scientific | |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | refinement | CNS | BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ,RICE,SIMONSON,WARREN |