Solution structure of matrix metalloproteinase 3 (MMP-3) in the presence of 3-4'-cyanobyphenyl-4-yloxy)-n-hdydroxypropionamide (MMP-3 inhibitor VII)
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 1 mM [U-98% 15N] entity_1 | 90% H2O/10% D2O | 300 | 8 | ambient | 298 | |
| 2 | 3D 1H-15N NOESY | 1 mM [U-98% 15N] entity_1 | 90% H2O/10% D2O | 300 | 8 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 900 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | The docked structure with Autodock was energy minimized with Xplor-NIH using the experimental data | X-PLOR NIH |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the least restraint violations |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 1 |
| Representative Model | 1 (fewest violations) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
| 2 | refinement | AutoDock | 3.0 | Morris, Goodsell, Huey, Lindstorm, Hart, Kurowski, Halliday, Belew, Olson |
| 3 | data analysis | Sparky | Goddard | |
