2JSD
Solution structure of MMP20 complexed with NNGH
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D HNCA | 0.6 mM [U-13C; U-15N] MMP-20 | 90% H2O/10% D2O | 0.05 | 7.0 | ambient | 298 | |
2 | 3D CBCA(CO)NH | 0.6 mM [U-13C; U-15N] MMP-20 | 90% H2O/10% D2O | 0.05 | 7.0 | ambient | 298 | |
3 | 3D HNCO | 0.6 mM [U-13C; U-15N] MMP-20 | 90% H2O/10% D2O | 0.05 | 7.0 | ambient | 298 | |
4 | 3D HNCACB | 0.6 mM [U-13C; U-15N] MMP-20 | 90% H2O/10% D2O | 0.05 | 7.0 | ambient | 298 | |
5 | 3D HCCH-TOCSY | 0.6 mM [U-13C; U-15N] MMP-20 | 90% H2O/10% D2O | 0.05 | 7.0 | ambient | 298 | |
6 | 3D 1H-15N NOESY | 0.6 mM [U-13C; U-15N] MMP-20 | 90% H2O/10% D2O | 0.05 | 7.0 | ambient | 298 | |
7 | 3D 1H-13C NOESY | 0.6 mM [U-13C; U-15N] MMP-20 | 90% H2O/10% D2O | 0.05 | 7.0 | ambient | 298 | |
8 | r2, r1, 15n-noe | 0.6 mM [U-99% 15N] MMP-20 | 90% H2O/10% D2O | 0.05 | 7.0 | ambient | 298 | |
9 | 2D 1H-1H NOESY | 1 mM MMP-20 | 90% H2O/10% D2O | 0.05 | 7.0 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Bruker | AVANCE | 900 |
3 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 400 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
2 | refinement | Amber | 8.0 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Koll |
3 | processing | TopSpin | Bruker Biospin | |
4 | chemical shift assignment | CARA | 1.8 | (CARA) by Rochus Keller |
5 | collection | CARA | 1.8 | (CARA) by Rochus Keller |
6 | refinement | QUEEN | Nabuurs, Spronk, Krieger, Maassen, Vriend and Vuister | |
7 | refinement | AQUA | Rullmann, Doreleijers and Kaptein |