2JQA
Solution structure of apo-DR1885 from Deinococcus radiodurans
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1 mM [U-13C; U-15N] protein | 90% H2O/10% D2O | 100 | 7.0 | ambient | 298 | |
2 | 3D 1H-15N NOESY | 1 mM [U-13C; U-15N] protein | 90% H2O/10% D2O | 100 | 7.0 | ambient | 298 | |
3 | 3D 1H-13C NOESY | 1 mM [U-13C; U-15N] protein | 90% H2O/10% D2O | 100 | 7.0 | ambient | 298 | |
4 | 2D 1H-1H NOESY | 1.5 mM protein | 90% H2O/10% D2O | 100 | 7.0 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, torsion angle dynamics | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 300 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Additional NMR Experimental Information | |
---|---|
Details | The structure was determined using a combination of NOE and angle constraints. |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | Amber | 8 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Koll |
2 | structure solution | DYANA | Guntert, Braun and Wuthrich | |
3 | data analysis | XEASY | Bartels et al. | |
4 | processing | XwinNMR | Bruker Biospin |