2JQ8

Solution structure of the Somatomedin B domain from vitronectin produced in Pichia pastoris


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.4 mM [U-99% 13C; U-99% 15N] SMB90% H2O/10% D2O06.5ambient298
23D HNCO0.4 mM [U-99% 13C; U-99% 15N] SMB90% H2O/10% D2O06.5ambient298
33D HNCA0.4 mM [U-99% 13C; U-99% 15N] SMB90% H2O/10% D2O06.5ambient298
43D HNCACB0.4 mM [U-99% 13C; U-99% 15N] SMB90% H2O/10% D2O06.5ambient298
53D HN(CO)CA0.4 mM [U-99% 13C; U-99% 15N] SMB90% H2O/10% D2O06.5ambient298
63D HN(COCA)CB0.4 mM [U-99% 13C; U-99% 15N] SMB90% H2O/10% D2O06.5ambient298
72D 1H-1H NOESY0.7 mM SMB90% H2O/10% D2O06.5ambient298
83D 1H-13C NOESY0.4 mM [U-99% 13C; U-99% 15N] SMB90% H2O/10% D2O06.5ambient298
93D 1H-15N NOESY0.4 mM [U-99% 13C; U-99% 15N] SMB90% H2O/10% D2O06.5ambient298
103D HCCH-TOCSY0.4 mM [U-99% 13C; U-99% 15N] SMB90% H2O/10% D2O06.5ambient298
113D 1H-15N TOCSY0.4 mM [U-99% 13C; U-99% 15N] SMB90% H2O/10% D2O06.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianUNITY750
NMR Refinement
MethodDetailsSoftware
molecular dynamicsPRONTO
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (fewest violations)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentPRONTOKj r, Andersen and Poulsen
2processingNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3data analysisSPARKYGoddard
4structure solutionCYANAGuntert, Mumenthaler and Wuthrich
5refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read