2JPQ

Solution NMR structure of homodimer VP2129 from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium target VpR61.

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	293
2	2D 1H-13C HSQC	1.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	293
3	3D 1H-15N NOESY	1.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	293
4	3D 1H-13C NOESY aliph	1.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	293
5	3D HNCACB	1.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	293
6	2D 1H-13C HSQC	1.4 mM [U-5% 13C; U-100% 15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	293
7	3D 1H-13C NOESY	1.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	100% D2O	0.1	5.5	ambient	293
8	4D 1H-13C NOESY	1.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	100% D2O	0.1	5.5	ambient	293
9	3D HBHA(CO)NH	1.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	293
10	3D HNHA	1.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	293
11	3D CBCA(CO)NH	1.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	293
12	3D HNCA	1.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	293
13	3D HN(CO)CA	1.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	293
14	3D HNCO	1.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	293
15	3D C(CO)NH	1.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	293
16	3D HCCH-COSY	1.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	293
17	3D HCCH-TOCSY	1.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	293
18	2D 1H-13C HSQC	1.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	100% D2O	0.1	5.5	ambient	293
19	2D 1H-15N HSQC	1.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	100% D2O	0.1	5.5	ambient	293
20	3D edited filtered 1H-13C NOESY	0.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide, 0.4 mM VP2129	100% D2O	0.1	5.5	ambient	293
21	3D 1H-13C NOESY arom	1.4 mM [U-13C; U-15N] VP2129, 100 mM sodium chloride, 5 mM calcium chloride, 20 mM ammonium acetate, 10 mM DTT, 0.02 % sodium azide	95% H2O/5% D2O	0.1	5.5	ambient	293

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	500
2	Varian	INOVA	600
3	Varian	INOVA	750

NMR Refinement
Method	Details	Software
distance geometry, simulated annealing		NMRPipe

NMR Ensemble Information
Conformer Selection Criteria	all calculated structures submitted
Conformers Calculated Total Number	20
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe	nmrpipe_linux	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	collection	VNMR		Varian
3	data analysis	AutoStructure	2.1.1	Huang, Tejero, Powers and Montelione
4	structure solution	X-PLOR NIH	2.15.0	Schwieters, Kuszewski, Tjandra and Clore
5	refinement	CNS	1.1	Brunger, Adams, Clore, Gros, Nilges and Read
6	data analysis	Sparky	3.1	Goddard
7	structure solution	AutoAssign	2.3.0
8	structure solution	CNS	1.1
9	structure solution	PSVS	1.3