2JPO

NMR structure of Antheraea polyphemus pheromone-binding protein 1 at pH 4.5

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.9 MM [U-99% 13C; U-99% 15N] APOLPBP1, 2MM NAN3, 50MM PHOSPHATE BUFFER, 95% H2O/5% D2O		0.05	4.50	AMBIENT	293
2	2D 1H-13C HSQC	0.9 MM [U-99% 13C; U-99% 15N] APOLPBP1, 2MM NAN3, 50MM PHOSPHATE BUFFER, 95% H2O/5% D2O		0.05	4.50	AMBIENT	293
3	3D CBCA(CO)NH	0.9 MM [U-99% 13C; U-99% 15N] APOLPBP1, 2MM NAN3, 50MM PHOSPHATE BUFFER, 95% H2O/5% D2O		0.05	4.50	AMBIENT	293
4	3D C(CO)NH	0.9 MM [U-99% 13C; U-99% 15N] APOLPBP1, 2MM NAN3, 50MM PHOSPHATE BUFFER, 95% H2O/5% D2O		0.05	4.50	AMBIENT	293
5	3D HNCO	0.9 MM [U-99% 13C; U-99% 15N] APOLPBP1, 2MM NAN3, 50MM PHOSPHATE BUFFER, 95% H2O/5% D2O		0.05	4.50	AMBIENT	293
6	3D HNCA	0.9 MM [U-99% 13C; U-99% 15N] APOLPBP1, 2MM NAN3, 50MM PHOSPHATE BUFFER, 95% H2O/5% D2O		0.05	4.50	AMBIENT	293
7	3D HNCACB	0.9 MM [U-99% 13C; U-99% 15N] APOLPBP1, 2MM NAN3, 50MM PHOSPHATE BUFFER, 95% H2O/5% D2O		0.05	4.50	AMBIENT	293
8	3D H(CCO)NH	0.9 MM [U-99% 13C; U-99% 15N] APOLPBP1, 2MM NAN3, 50MM PHOSPHATE BUFFER, 95% H2O/5% D2O		0.05	4.50	AMBIENT	293
9	3D HCCH-TOCSY	0.9 MM [U-99% 13C; U-99% 15N] APOLPBP1, 2MM NAN3, 50MM PHOSPHATE BUFFER, 95% H2O/5% D2O		0.05	4.50	AMBIENT	293
10	3D 1H-15N NOESY	0.9 MM [U-99% 13C; U-99% 15N] APOLPBP1, 2MM NAN3, 50MM PHOSPHATE BUFFER, 95% H2O/5% D2O		0.05	4.50	AMBIENT	293
11	3D 1H-15N TOCSY	0.9 MM [U-99% 13C; U-99% 15N] APOLPBP1, 2MM NAN3, 50MM PHOSPHATE BUFFER, 95% H2O/5% D2O		0.05	4.50	AMBIENT	293
12	3D 1H-13C NOESY	0.9 MM [U-99% 13C; U-99% 15N] APOLPBP1, 2MM NAN3, 50MM PHOSPHATE BUFFER, 95% H2O/5% D2O		0.05	4.50	AMBIENT	293
13	3D HCCH-COSY	0.9 MM [U-99% 13C; U-99% 15N] APOLPBP1, 2MM NAN3, 50MM PHOSPHATE BUFFER, 95% H2O/5% D2O		0.05	4.50	AMBIENT	293
14	3D HN(CA)CO	0.9 MM [U-99% 13C; U-99% 15N] APOLPBP1, 2MM NAN3, 50MM PHOSPHATE BUFFER, 95% H2O/5% D2O		0.05	4.50	AMBIENT	293
15	15N- RESOLVED	0.9 MM [U-99% 13C; U-99% 15N] APOLPBP1, 2MM NAN3, 50MM PHOSPHATE BUFFER, 95% H2O/5% D2O		0.05	4.50	AMBIENT	293
16	1H,1H TOCSY	0.9 MM [U-99% 13C; U-99% 15N] APOLPBP1, 2MM NAN3, 50MM PHOSPHATE BUFFER, 95% H2O/5% D2O		0.05	4.50	AMBIENT	293
17	3D_15N- SEPARATED NOESY	0.9 MM [U-99% 13C; U-99% 15N] APOLPBP1, 2MM NAN3, 50MM PHOSPHATE BUFFER, 95% H2O/5% D2O		0.05	4.50	AMBIENT	293
18	3D_13C- SEPARATED NOESY	0.9 MM [U-99% 13C; U-99% 15N] APOLPBP1, 2MM NAN3, 50MM PHOSPHATE BUFFER, 95% H2O/5% D2O		0.05	4.50	AMBIENT	293

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	Avance	900
2	Bruker	DRX	750
3	Bruker	DRX	500
4	Bruker	DRX	600

NMR Refinement
Method	Details	Software
TORSION ANGLE DYNAMICS, SIMULATED ANNEALING	SIMULATED ANNEALING USING TORSION ANGLE DYNAMICS FOLLOWED BY REFINEMENT IN A WATER BATH	OPALP

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	80
Conformers Submitted Total Number	20
Representative Model	1 (n/a)

Additional NMR Experimental Information
Details	TWO 13C-RESOLVED NOESY SPECTRA WERE MEASURED, ONE WITH THE 13C CARRIER CENTERED AT 35 PPM (ALIPHATICS), AND THE OTHER WITH THE CARRIER AT 125 PPM (AROMATICS). ALL PROTONS WERE EXCITED AND DECOUPLED WITH A REFOCUSSING 180 IN THE NOE DIMENSION, WHERE AS BROADBAND 13C-DECOUPLING WAS ONLY APPLIED TO ONE OF THE TWO CLASSES OF 1H DURING ACQUISITION.

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	OPALP	1.2	LUGINBUHL, GUNTERT, BILLETER, AND WUTHRICH
2	structure solution	CARA	1.8
3	structure solution	ATNOS/CANDID	1.2
4	structure solution	DYANA	1.0.3
5	structure solution	MOLMOL	2.2K

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.