2JP2

Solution structure and resonance assignment of the N-terminal EVH1 domain from the human Spred2 protein (Sprouty-related protein with EVH1 domain isoform 2)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-100% 15N] Spred2 EVH1, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 % sodium azide90% H2O/10% D2O0.056.0ambient298
23D CBCA(CO)NH1 mM [U-100% 13C; U-100% 15N] Spred2 EVH1, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 % sodium azide90% H2O/10% D2O0.056.0ambient298
33D CBCANH1 mM [U-100% 13C; U-100% 15N] Spred2 EVH1, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 % sodium azide90% H2O/10% D2O0.056.0ambient298
43D H(CCO)NH1 mM [U-100% 13C; U-100% 15N] Spred2 EVH1, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 % sodium azide90% H2O/10% D2O0.056.0ambient298
53D C(CO)NH1 mM [U-100% 13C; U-100% 15N] Spred2 EVH1, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 % sodium azide90% H2O/10% D2O0.056.0ambient298
63D HNCO1 mM [U-100% 13C; U-100% 15N] Spred2 EVH1, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 % sodium azide90% H2O/10% D2O0.056.0ambient298
73D HCCH-TOCSY1 mM [U-100% 13C; U-100% 15N] Spred2 EVH1, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 % sodium azide100% D2O0.056.0ambient298
83D HNHA1 mM [U-100% 15N] Spred2 EVH1, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 % sodium azide90% H2O/10% D2O0.056.0ambient298
93D HNHB1 mM [U-100% 15N] Spred2 EVH1, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 % sodium azide90% H2O/10% D2O0.056.0ambient298
102D 1H-1H TOCSY1 mM [U-100% 15N] Spred2 EVH1, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 % sodium azide100% D2O0.056.0ambient298
112D DQF-COSY1 mM [U-100% 15N] Spred2 EVH1, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 % sodium azide100% D2O0.056.0ambient298
122D 1H-1H NOESY1 mM [U-100% 15N] Spred2 EVH1, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 % sodium azide100% D2O0.056.0ambient298
133D 1H-15N NOESY1 mM [U-100% 15N] Spred2 EVH1, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 % sodium azide90% H2O/10% D2O0.056.0ambient298
143D 1H-13C NOESY1 mM [U-100% 13C; U-100% 15N] Spred2 EVH1, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 % sodium azide90% H2O/10% D2O0.056.0ambient298
153D 1H-13C NOESY1 mM [U-100% 13C; U-100% 15N] Spred2 EVH1, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 % sodium azide100% D2O0.056.0ambient298
162D 3JHNHa series1 mM [U-100% 15N] Spred2 EVH1, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 % sodium azide90% H2O/10% D2O0.056.0ambient298
172D 15N T1 series1 mM [U-100% 15N] Spred2 EVH1, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 % sodium azide90% H2O/10% D2O0.056.0ambient298
182D 15N T2 series1 mM [U-100% 15N] Spred2 EVH1, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 % sodium azide90% H2O/10% D2O0.056.0ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX600
2BrukerDMX750
NMR Refinement
MethodDetailsSoftware
simulated annealing, molecular dynamicsManual structure refinement, Refinement in explicit waterXWIN-NMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXWIN-NMR2.6Bruker Biospin
2data analysisANSIG3.3Kraulis
3chemical shift assignmentANSIG3.3Kraulis
4peak pickingANSIG3.3Kraulis
5integrationANSIG3.3Kraulis
6data analysisAzara2.1Boucher
7peak pickingAzara2.1Boucher
8refinementPSVS1.3Hang, Montelione, et al.
9structure validationPSVS1.3Hang, Montelione, et al.
10structure solutionX-PLOR NIH2.14Schwieters, Kuszewski, Tjandra and Clore
11refinementX-PLOR NIH2.14Schwieters, Kuszewski, Tjandra and Clore
12structure solutionARIA1.2Linge, O'Donoghue and Nilges
13refinementARIA1.2Linge, O'Donoghue and Nilges