2JP1

Solution structure of the alternative conformation of XCL1/Lymphotactin


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESY1.0 mM XCL1 U-15N/13C, 20 mM sodium phosphate, 95% H2O, 5% D2O95% H2O/5% D2O226.0AMBIENT313
23D_13C-separated_NOESY1.0 mM XCL1 U-15N/13C, 20 mM sodium phosphate, 95% H2O, 5% D2O95% H2O/5% D2O226.0AMBIENT313
43D_13C-F1-filtered_13C-F3-separated_NOESY0.6 mM XCL1 U-15N/13C, 0.6 mM XCL1 unlabeled, 20 mM sodium phosphate, 95% H2O, 5% D2O95% H2O/5% D2O226.0AMBIENT313
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX600
NMR Refinement
MethodDetailsSoftware
AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT SOLVENTHOMODIMER STRUCTURES ARE BASED ON A TOTAL OF 1295 NOE CONSTRAINTS ( 320 INTRA, 370 SEQUENTIAL, 104 MEDIUM, 420 LONG RANGE and 81 INTERMONOMER CONSTRAINTS) AND 131 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. CONSTRAINT WERE IN ONE ASSIGNED AND VALIDATED IN ONE MONOMER AND THEN DUPLICATED TO GENERATE A SYMMETRY RELATED CONSTRAINT IN THE SECOND MONOMER. CONSTRAINT TOTALS LISTED ABOVE INCLUDE CONSTRAINTS FROM BOTH MONOMERS.Xplor-NIH
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementXplor-NIH2.9.3SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M.
2collectionXwinNMR3.5Bruker
3processingNMRPipe2004Delagio,F. et al.
4data analysisXEASY1.3Eccles, C., Guntert, P., Billeter, M., Wuthrich, K.
5data analysisSPSCAN1.1.0R.W. Glaser
6data analysisGARANT2.1C. Bartels
7structural calculationCYANA2.1Guntert, P.