2JOE | pdb_00002joe

NMR Structure of E. Coli YehR Protein. Northeast Structural Genomics Target ER538.

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	5.5	ambient	293
2	3D HNCO	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	5.5	ambient	293
3	3D HNCA	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	5.5	ambient	293
4	3D HN(CO)CA	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	5.5	ambient	293
5	3D CBCA(CO)NH	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	5.5	ambient	293
6	3D HNCACB	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	5.5	ambient	293
7	3D HBHA(CO)NH	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	5.5	ambient	293
8	3D HNHA	1 mM [U-5% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	5.5	ambient	293
9	3D C(CO)NH	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	5.5	ambient	293
10	3D H(CCO)NH	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	5.5	ambient	293
11	3D HCCH-TOCSY	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	5.5	ambient	293
12	2D 1H-13C HSQC	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	100% D2O	100	5.5	ambient	293
13	2D 1H-13C (Arom) HSQC	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	5.5	ambient	293
14	2D 1H-15N HSQC	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	5.5	ambient	283
15	2D 1H-15N (NH2) HSQC	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	5.5	ambient	293
16	3D 1H-15N NOESY	1 mM [U-5% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	5.5	ambient	283
17	3D 1H-13C (Aliph) NOESY	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	5.5	ambient	283
18	3D 1H-13C (Arom) NOESY	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	5.5	ambient	283
19	3D 1H-13C (Aliph) NOESY	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	100% D2O	100	5.5	ambient	293
20	4D 1H-13C NOESY	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	100% D2O	100	5.5	ambient	293
21	2D 1H-13C HSQC	1 mM [U-5% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	5.5	ambient	283

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	750
2	Varian	INOVA	600
3	Varian	INOVA	500

NMR Refinement
Method	Details	Software
DGSA-distance geometry simulated annealing	distance geometry simulated annealing using NIH xplor, followed by cns water refinement.	X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest NOE and bond energy
Conformers Calculated Total Number	30
Conformers Submitted Total Number	20
Representative Model	1 (lowest total energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	X-PLOR NIH	2.15.0	Schwieters, Kuszewski, Tjandra and Clore
2	refinement	CNS	1.1	Brunger, Adams, Clore, Gros, Nilges and Read
3	peak picking	Sparky	3.1	Goddard
4	processing	NMRPipe	linux9	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5	data analysis	AutoStructure	2.1.1	Huang, Swapana, Rajan, Ke, Xia, Shukla, Inouye and Montelione