Solution structure of an antilipopolysaccharide factor from shrimp and its possible Lipid A binding site
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D DQF-COSY | 1 mM [U-99% 15N] ALF | 90% H2O/10% D2O | no salt | 6.9 | ambient | 305 | |
| 2 | 2D 1H-1H TOCSY | 1 mM [U-99% 15N] ALF | 90% H2O/10% D2O | no salt | 6.9 | ambient | 305 | |
| 3 | 2D 1H-1H NOESY | 1 mM [U-99% 15N] ALF | 90% H2O/10% D2O | no salt | 6.9 | ambient | 305 | |
| 4 | 2D 1H-15N HSQC | 1 mM [U-99% 15N] ALF | 90% H2O/10% D2O | no salt | 6.9 | ambient | 305 | |
| 5 | 3D 1H-15N NOESY | 1 mM [U-99% 15N] ALF | 90% H2O/10% D2O | no salt | 6.9 | ambient | 305 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | XwinNMR | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 60 |
| Conformers Submitted Total Number | 15 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | XwinNMR | Bruker Biospin | |
| 2 | processing | Gifa | Delsuc | |
| 3 | structure solution | X-PLOR | Brunger | |
| 4 | refinement | X-PLOR | Brunger | |














