SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 0.8 mM [U-99% 15N] delta-Bd37, 95% H2O/5% D2 | 95% H2O/5% D2O | 50 | 6.8 | ambient | 310 | |
| 2 | 3D 1H-15N NOESY | 0.8 mM [U-99% 15N] delta-Bd37, 95% H2O/5% D2 | 95% H2O/5% D2O | 50 | 6.8 | ambient | 310 | |
| 3 | 3D 1H-13C NOESY | 0.8 mM [U-99% 13C; U-99% 15N] delta-Bd37 | 95% H2O/5% D2O | 50 | 6.8 | ambient | 310 | |
| 4 | 3D 1H-15N NOESY | 0.8 mM [U-99% 15N] delta-Bd37, 95% H2O/5% D2 | 95% H2O/5% D2O | 50 | 6.8 | ambient | 310 | |
| 5 | (in-phase/antiphase) [15N-1H] HSQC | 0.8 mM [U-99% 15N] delta-Bd37, 95% H2O/5% D2 | 95% H2O/5% D2O | 50 | 6.8 | ambient | 310 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | Use of 1DNH residual dipolar couplings values in order to improve local geometry | PREDITOR |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (closest to the average) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | geometry optimization | PREDITOR | 1 | Berjanskii |
| 2 | data analysis | CINDY | PADILLA | |
| 3 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 4 | refinement | Amber | 8 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Koll |
| 5 | processing | Gifa | 4 | Delsuc |
| 6 | geometry optimization | TALOS | Cornilescu, Delaglio and Bax | |
