2JN9

NMR solution structure of YkvR protein from Bacillus subtilis: NESG target SR358

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D CBCA(CO)NH	1.17 mM protein, 1.0 mM sodium azide, 95% H2O, 5% D2O	95% H2O/5% D2O	5.11	6.5	ambient	293
2	3D HNCACB	1.17 mM protein, 1.0 mM sodium azide, 95% H2O, 5% D2O	95% H2O/5% D2O	5.11	6.5	ambient	293
3	2D 1H-15N HSQC	1.17 mM protein, 1.0 mM sodium azide, 95% H2O, 5% D2O	95% H2O/5% D2O	5.11	6.5	ambient	293
4	2D 1H-13C HSQC	1.17 mM protein, 1.0 mM sodium azide, 95% H2O, 5% D2O	95% H2O/5% D2O	5.11	6.5	ambient	293
5	3D HNCO	1.17 mM protein, 1.0 mM sodium azide, 95% H2O, 5% D2O	95% H2O/5% D2O	5.11	6.5	ambient	293
6	3D HBHA(CO)NH	1.17 mM protein, 1.0 mM sodium azide, 95% H2O, 5% D2O	95% H2O/5% D2O	5.11	6.5	ambient	293
7	3D HNHA	1.17 mM protein, 1.0 mM sodium azide, 95% H2O, 5% D2O	95% H2O/5% D2O	5.11	6.5	ambient	293
8	3D HCCH-TOCSY	1.17 mM protein, 1.0 mM sodium azide	100% D2O	5.11	6.5	ambient	293
9	3D 1H-15N NOESY	1.17 mM protein, 1.0 mM sodium azide, 95% H2O, 5% D2O	95% H2O/5% D2O	5.11	6.5	ambient	293
10	3D 1H-13C NOESY	1.17 mM protein, 1.0 mM sodium azide	100% D2O	5.11	6.5	ambient	293

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600
2	Bruker	AVANCE	600
3	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
distance geometry		AutoAssign

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	56
Conformers Submitted Total Number	10
Representative Model	1 (minimized average structure)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	data analysis	AutoAssign	2.1	Zimmerman, Moseley, Kulikowski, Montelione
2	data analysis	AVS		Moseley and Montelione
3	processing	AVS		Moseley and Montelione
4	refinement	AutoStructure		Huang, Swapana, Rajan, Ke, Xia, Shukla, Inouye and Montelione
5	structure solution	AutoStructure		Huang, Swapana, Rajan, Ke, Xia, Shukla, Inouye and Montelione
6	structure solution	DYANA		Guntert, Braun and Wuthrich
7	refinement	DYANA		Guntert, Braun and Wuthrich
8	refinement	CNS	1.1	Brunger, Adams, Clore, Gros, Nilges and Read
9	refinement	X-PLOR	2.0.6	Brunger

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.