2JMW | pdb_00002jmw

Structure of DNA-Binding Domain of Arabidopsis GT-1

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D 1H-15N NOESY	1 mM [U-100% 13C, U-100% 15N] GT-1, 20 mM sodium phosphate, 100 mM sodium chloride, 10 mM [U-100% 2H] DTT, 1 mM sodium azide, 1 mM DSS, 95% H2O, 5% D2O	95% H2O/5% D2O	120	6.0	ambient	298
2	3D 1H-13C NOESY	1 mM [U-100% 13C, U-100% 15N] GT-1, 20 mM sodium phosphate, 100 mM sodium chloride, 10 mM [U-100% 2H] DTT, 1 mM sodium azide, 1 mM DSS, 95% H2O, 5% D2O	95% H2O/5% D2O	120	6.0	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	DRX	800

NMR Refinement
Method	Details	Software
simulated annealing, torsion angle dynamics		CYANA

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	CYANA	2.0.17	Guntert, Mumenthaler and Wuthrich
2	chemical shift assignment	KUJIRA	0.9820	Kobayashi
3	data analysis	KUJIRA	0.9820	Kobayashi
4	peak picking	KUJIRA	0.9820	Kobayashi
5	data analysis	NMRView	5.0.4	Johnson, One Moon Scientific
6	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
7	collection	XwinNMR	3.5	Bruker Biospin
8	refinement	CYANA	2.0.17	Guntert, Mumenthaler and Wuthrich