2JMI
NMR solution structure of PHD finger fragment of Yeast Yng1 protein in free state
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.6 mM [U-15N] YNG1_PHD, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50 | 7.5 | ambient | 20 | |
2 | 2D 1H-13C HSQC | 0.54 mM [U-13C, U-15N] YNG1_PHD, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50 | 7.5 | ambient | 20 | |
3 | 3D HNCO | 0.54 mM [U-13C, U-15N] YNG1_PHD, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50 | 7.5 | ambient | 20 | |
4 | 3D HNCA | 0.54 mM [U-13C, U-15N] YNG1_PHD, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50 | 7.5 | ambient | 20 | |
5 | 3D HNCACB | 0.54 mM [U-13C, U-15N] YNG1_PHD, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50 | 7.5 | ambient | 20 | |
6 | 3D CBCA(CO)NH | 0.54 mM [U-13C, U-15N] YNG1_PHD, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50 | 7.5 | ambient | 20 | |
7 | 3D HN(CO)CA | 0.54 mM [U-13C, U-15N] YNG1_PHD, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50 | 7.5 | ambient | 20 | |
8 | 3D HBHA(CO)NH | 0.54 mM [U-13C, U-15N] YNG1_PHD, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50 | 7.5 | ambient | 20 | |
9 | 3D HCCH-TOCSY | 0.54 mM [U-13C, U-15N] YNG1_PHD | 100% D2O | 50 | 7.5 | ambient | 20 | |
10 | 3D 1H-15N NOESY | 0.6 mM [U-15N] YNG1_PHD, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50 | 7.5 | ambient | 20 | |
11 | 3D 1H-13C NOESY | 0.54 mM [U-13C, U-15N] YNG1_PHD | 100% D2O | 50 | 7.5 | ambient | 20 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 85 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
2 | collection | TopSpin | Bruker Biospin | |
3 | data analysis | TopSpin | Bruker Biospin | |
4 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
5 | structure solution | CARA | Keller and Wuthrich | |
6 | data analysis | CARA | Keller and Wuthrich | |
7 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |