2JM4

The solution NMR structure of the relaxin (RXFP1) receptor LDLa module.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D HNCO1.5 mM 13C, 15N RXFP1-LDLa, 10 mM calcium chloride, 50 mM acetic acid, 90% H2O, 10% D2O, pH 5.5 (adjusted with NaOH)90% H2O/10% D2O5.5ambient303.15
23D HNCA1.5 mM 13C, 15N RXFP1-LDLa, 10 mM calcium chloride, 50 mM acetic acid, 90% H2O, 10% D2O, pH 5.5 (adjusted with NaOH)90% H2O/10% D2O5.5ambient303.15
33D HNCACB1.5 mM 13C, 15N RXFP1-LDLa, 10 mM calcium chloride, 50 mM acetic acid, 90% H2O, 10% D2O, pH 5.5 (adjusted with NaOH)90% H2O/10% D2O5.5ambient303.15
43D CBCA(CO)NH1.5 mM 13C, 15N RXFP1-LDLa, 10 mM calcium chloride, 50 mM acetic acid, 90% H2O, 10% D2O, pH 5.5 (adjusted with NaOH)90% H2O/10% D2O5.5ambient303.15
53D HBHA(CO)NH1.5 mM 13C, 15N RXFP1-LDLa, 10 mM calcium chloride, 50 mM acetic acid, 90% H2O, 10% D2O, pH 5.5 (adjusted with NaOH)90% H2O/10% D2O5.5ambient303.15
63D C(CO)NH1.5 mM 13C, 15N RXFP1-LDLa, 10 mM calcium chloride, 50 mM acetic acid, 90% H2O, 10% D2O, pH 5.5 (adjusted with NaOH)90% H2O/10% D2O5.5ambient303.15
73D H(CCO)NH1.5 mM 13C, 15N RXFP1-LDLa, 10 mM calcium chloride, 50 mM acetic acid, 90% H2O, 10% D2O, pH 5.5 (adjusted with NaOH)90% H2O/10% D2O5.5ambient303.15
82D 1H-15N HSQC1.0 mM 15N RXFP1-LDLa, 10 mM calcium chloride, 50 mM acetic acid, 90% H2O, 10% D2O, pH 5.5 (adjusted with NaOH)90% H2O/10% D2O5.5ambient303.15
92D 1H-15N HSQC1.5 mM 13C, 15N RXFP1-LDLa, 10 mM calcium chloride, 50 mM acetic acid, 90% H2O, 10% D2O, pH 5.5 (adjusted with NaOH)90% H2O/10% D2O5.5ambient303.15
103D HCCH-TOCSY1.5 mM 13C, 15N RXFP1-LDLa, 10 mM calcium chloride, 50 mM acetic acid, 90% H2O, 10% D2O, pH 5.5 (adjusted with NaOH)90% H2O/10% D2O5.5ambient303.15
113D HNHA1.0 mM 15N RXFP1-LDLa, 10 mM calcium chloride, 50 mM acetic acid, 90% H2O, 10% D2O, pH 5.5 (adjusted with NaOH)90% H2O/10% D2O5.5ambient303.15
123D 1H-15N NOESY1.0 mM 15N RXFP1-LDLa, 10 mM calcium chloride, 50 mM acetic acid, 90% H2O, 10% D2O, pH 5.5 (adjusted with NaOH)90% H2O/10% D2O5.5ambient303.15
133D 1H-13C NOESY1.5 mM 13C, 15N RXFP1-LDLa, 10 mM calcium chloride, 50 mM acetic acid, 90% H2O, 10% D2O, pH 5.5 (adjusted with NaOH)90% H2O/10% D2O5.5ambient303.15
143D HNHB1.0 mM 15N RXFP1-LDLa, 10 mM calcium chloride, 50 mM acetic acid, 90% H2O, 10% D2O, pH 5.5 (adjusted with NaOH)90% H2O/10% D2O5.5ambient303.15
153D HACAHB1.5 mM 13C, 15N RXFP1-LDLa, 10 mM calcium chloride, 50 mM acetic acid, 90% H2O, 10% D2O, pH 5.5 (adjusted with NaOH)90% H2O/10% D2O5.5ambient303.15
162D 1H-13C HSQC1.5 mM 13C, 15N RXFP1-LDLa, 10 mM calcium chloride, 50 mM acetic acid, 90% H2O, 10% D2O, pH 5.5 (adjusted with NaOH)90% H2O/10% D2O5.5ambient303.15
172D 1H-13C HSQC1.0 mM 10% 13C, 90% 12C RXFP1-LDLa, 10 mM calcium chloride, 50 mM acetic acid, 90% H2O, 10% D2O, pH 5.5 (adjusted with NaOH)90% H2O/10% D2O5.5ambient303.15
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA500
NMR Refinement
MethodDetailsSoftware
simulated annealing, torsion angle dynamicsSparky
NMR Ensemble Information
Conformer Selection Criterialowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number24
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1data analysisSparky3.106Goddard
2processingNMRPipe2.3Delaglio,Grzesiek,Vuister,Zhu,Pfeifer,Bax
3refinementX-PLOR NIH2.9.9Schwieters, Kuszewski, Tjandra, Clore
4structure solutionCYANA1.0.7Guntert,Mumenthaler,Wuthrich
5data analysisNMRView5.2.2Johnson
6refinementProcheckNMR3.5.4Laskowski, MacArthur