X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
12% PEG 8000, 1.0 M LITHIUM SULFATE
Crystal Properties
Matthews coefficientSolvent content
3.7466.84

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.64α = 90
b = 73.64β = 90
c = 143.443γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110IMAGE PLATERIGAKU IMAGE PLATE2007-06-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.335.6799.70.0817.83.7206073
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.4298.70.24.93.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1TCS2.363.7619527105199.60.1860.1840.214RANDOM20.54
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.120.561.12-1.68
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.243
r_dihedral_angle_4_deg23.635
r_dihedral_angle_3_deg13.682
r_dihedral_angle_1_deg6.19
r_scangle_it2.614
r_scbond_it1.811
r_angle_refined_deg1.385
r_mcangle_it1.106
r_mcbond_it0.963
r_angle_other_deg0.86
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.243
r_dihedral_angle_4_deg23.635
r_dihedral_angle_3_deg13.682
r_dihedral_angle_1_deg6.19
r_scangle_it2.614
r_scbond_it1.811
r_angle_refined_deg1.385
r_mcangle_it1.106
r_mcbond_it0.963
r_angle_other_deg0.86
r_symmetry_vdw_other0.207
r_nbd_refined0.197
r_nbd_other0.188
r_nbtor_refined0.171
r_xyhbond_nbd_refined0.157
r_symmetry_vdw_refined0.132
r_symmetry_hbond_refined0.128
r_chiral_restr0.09
r_nbtor_other0.085
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1911
Nucleic Acid Atoms
Solvent Atoms164
Heterogen Atoms70

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
MOSFLMphasing