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Crystal structure of GNA with synthetic copper base pair
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 10% MPD, 40 MM SODIUM CACODYLATE, PH=5.5, 20 MM COBALT HEXAMINE, 80 MM NACL, 20 MM MGCL2.
Crystal Properties Matthews coefficient Solvent content 2.02 38.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 18.16 α = 90 b = 48.59 β = 90 c = 59.87 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2007-11-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 10 99.1 0.08 20.4 11.2 7095 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.33 99.8 0.3 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 1.3 10 6289 479 99 0.126 0.124 0.133 0.148 0.1533 RANDOM 13.68
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.82 0.91 -0.09
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 3.755 r_scbond_it 3.162 r_angle_refined_deg 2.074 r_angle_other_deg 0.955 r_symmetry_vdw_other 0.545 r_nbtor_refined 0.273 r_symmetry_vdw_refined 0.212 r_symmetry_hbond_refined 0.204 r_xyhbond_nbd_refined 0.189 r_nbd_other 0.188
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 3.755 r_scbond_it 3.162 r_angle_refined_deg 2.074 r_angle_other_deg 0.955 r_symmetry_vdw_other 0.545 r_nbtor_refined 0.273 r_symmetry_vdw_refined 0.212 r_symmetry_hbond_refined 0.204 r_xyhbond_nbd_refined 0.189 r_nbd_other 0.188 r_nbd_refined 0.092 r_nbtor_other 0.085 r_chiral_restr 0.061 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_bond_other_d 0.007 r_gen_planes_other 0.001 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 136 Solvent Atoms 80 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling