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The Structure of F1-ATPase inhibited by resveratrol.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W0J PDB ENTRY 1W0J
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.2 pH 8.2
Crystal Properties Matthews coefficient Solvent content 2.87 56.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.776 α = 90 b = 277.368 β = 90.19 c = 137.827 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 66.82 84.7 0.06 7.8 1.4 299020
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 77.5 0.24 2.1 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1W0J 2.3 138.68 284026 14990 84.6 0.163 0.16 0.1637 0.217 RANDOM 45.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.13 -0.4 0.86 1.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.779 r_dihedral_angle_4_deg 17.19 r_dihedral_angle_3_deg 15.643 r_dihedral_angle_1_deg 5.62 r_scangle_it 5.223 r_scbond_it 3.737 r_mcangle_it 2.149 r_mcbond_it 1.289 r_angle_refined_deg 1.234 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.779 r_dihedral_angle_4_deg 17.19 r_dihedral_angle_3_deg 15.643 r_dihedral_angle_1_deg 5.62 r_scangle_it 5.223 r_scbond_it 3.737 r_mcangle_it 2.149 r_mcbond_it 1.289 r_angle_refined_deg 1.234 r_nbtor_refined 0.3 r_nbd_refined 0.195 r_symmetry_vdw_refined 0.191 r_symmetry_hbond_refined 0.142 r_xyhbond_nbd_refined 0.139 r_chiral_restr 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 46464 Nucleic Acid Atoms Solvent Atoms 3879 Heterogen Atoms 434
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing