☰ Navigation Tabs
Structure of vaccinia related kinase 3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other ENSEMBLE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.1 M HEPES PH=7.5 2.0 M AMMONIUMFORMATE, pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.9 57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.258 α = 90 b = 54.423 β = 91.22 c = 91.822 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2007-04-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 46.8 99.2 0.06 12.5 3.6 60969
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 95.4 0.42 2.2 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT ENSEMBLE 2 50 57853 3092 99.4 0.181 0.179 0.1843 0.223 0.2294 RANDOM 27.82
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.27 -1.27 1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.591 r_dihedral_angle_4_deg 17.843 r_dihedral_angle_3_deg 13.809 r_scangle_it 7.95 r_scbond_it 6.364 r_dihedral_angle_1_deg 5.975 r_mcangle_it 4.014 r_mcbond_it 3.047 r_angle_refined_deg 1.265 r_angle_other_deg 0.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.591 r_dihedral_angle_4_deg 17.843 r_dihedral_angle_3_deg 13.809 r_scangle_it 7.95 r_scbond_it 6.364 r_dihedral_angle_1_deg 5.975 r_mcangle_it 4.014 r_mcbond_it 3.047 r_angle_refined_deg 1.265 r_angle_other_deg 0.93 r_symmetry_vdw_other 0.201 r_nbd_refined 0.195 r_nbd_other 0.183 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.164 r_symmetry_vdw_refined 0.134 r_symmetry_hbond_refined 0.114 r_nbtor_other 0.084 r_chiral_restr 0.07 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5111 Nucleic Acid Atoms Solvent Atoms 514 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing