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CRYSTAL STRUCTURE OF RHOGDI E155A, E157A MUTANT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BXW PDB ENTRY 2BXW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 2M AMMONIUM SULFATE, pH 8.00
Crystal Properties Matthews coefficient Solvent content 4.46 72.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 129.543 α = 90 b = 129.543 β = 90 c = 165.734 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-04-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 45 96.3 0.05 37.7 6.3 18039
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 74.9 0.51 0.27 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BXW 2.5 92.85 17110 926 96.2 0.222 0.22 0.2194 0.261 0.2566 RANDOM 41.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.41 -0.2 -0.41 0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.104 r_dihedral_angle_4_deg 22.07 r_dihedral_angle_3_deg 20.533 r_dihedral_angle_1_deg 8.197 r_scangle_it 3.384 r_scbond_it 2.48 r_angle_refined_deg 2.101 r_mcangle_it 1.754 r_mcbond_it 1.439 r_angle_other_deg 1.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.104 r_dihedral_angle_4_deg 22.07 r_dihedral_angle_3_deg 20.533 r_dihedral_angle_1_deg 8.197 r_scangle_it 3.384 r_scbond_it 2.48 r_angle_refined_deg 2.101 r_mcangle_it 1.754 r_mcbond_it 1.439 r_angle_other_deg 1.12 r_symmetry_vdw_other 0.305 r_nbd_refined 0.244 r_nbd_other 0.231 r_xyhbond_nbd_refined 0.204 r_nbtor_refined 0.201 r_symmetry_vdw_refined 0.188 r_chiral_restr 0.127 r_symmetry_hbond_refined 0.115 r_nbtor_other 0.1 r_bond_refined_d 0.024 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2204 Nucleic Acid Atoms Solvent Atoms 51 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing