X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
182M AMMONIUM SULFATE, pH 8.00
Crystal Properties
Matthews coefficientSolvent content
4.4672.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 129.543α = 90
b = 129.543β = 90
c = 165.734γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2006-04-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-IDAPS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.54596.30.0537.76.318039
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.5974.90.510.272.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2BXW2.592.851711092696.20.2220.220.261RANDOM41.78
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.41-0.2-0.410.61
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.104
r_dihedral_angle_4_deg22.07
r_dihedral_angle_3_deg20.533
r_dihedral_angle_1_deg8.197
r_scangle_it3.384
r_scbond_it2.48
r_angle_refined_deg2.101
r_mcangle_it1.754
r_mcbond_it1.439
r_angle_other_deg1.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.104
r_dihedral_angle_4_deg22.07
r_dihedral_angle_3_deg20.533
r_dihedral_angle_1_deg8.197
r_scangle_it3.384
r_scbond_it2.48
r_angle_refined_deg2.101
r_mcangle_it1.754
r_mcbond_it1.439
r_angle_other_deg1.12
r_symmetry_vdw_other0.305
r_nbd_refined0.244
r_nbd_other0.231
r_xyhbond_nbd_refined0.204
r_nbtor_refined0.201
r_symmetry_vdw_refined0.188
r_chiral_restr0.127
r_symmetry_hbond_refined0.115
r_nbtor_other0.1
r_bond_refined_d0.024
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2204
Nucleic Acid Atoms
Solvent Atoms51
Heterogen Atoms25

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing