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3-methyladenine dna-glycosylase from Archaeoglobus fulgidus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 50 MM MES, PH6.0., pH 6.00
Crystal Properties Matthews coefficient Solvent content 2.7 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.494 α = 90 b = 49.968 β = 107.43 c = 105.798 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-03-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 98.7 0.08 18 8 63551 18.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 97.9 0.5 3.5 7.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 12 60152 3203 98.4 0.187 0.185 0.1836 0.223 0.2196 RANDOM 19.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 0.2 0.49 -0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.162 r_dihedral_angle_4_deg 15.735 r_dihedral_angle_3_deg 14.673 r_dihedral_angle_1_deg 5.362 r_scangle_it 3.478 r_scbond_it 2.337 r_mcangle_it 1.511 r_angle_refined_deg 1.36 r_mcbond_it 1.038 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.162 r_dihedral_angle_4_deg 15.735 r_dihedral_angle_3_deg 14.673 r_dihedral_angle_1_deg 5.362 r_scangle_it 3.478 r_scbond_it 2.337 r_mcangle_it 1.511 r_angle_refined_deg 1.36 r_mcbond_it 1.038 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.219 r_nbd_refined 0.196 r_symmetry_hbond_refined 0.186 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.094 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4788 Nucleic Acid Atoms Solvent Atoms 495 Heterogen Atoms 98
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHARP phasing