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Structure of globular heads of M-ficolin complexed with N-acetyl-D- galactosamine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7
Crystal Properties Matthews coefficient Solvent content 2.47 49.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.97 α = 90 b = 73.97 β = 90 c = 126.47 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 25 99.3 0.09 10.36 5.7 23757
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 25 22717 1195 100 0.198 0.197 0.215 0.2268 RANDOM 25.68
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.72 0.36 0.72 -1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.185 r_dihedral_angle_4_deg 21.857 r_dihedral_angle_3_deg 13.036 r_dihedral_angle_1_deg 9.3 r_scangle_it 1.945 r_scbond_it 1.338 r_angle_refined_deg 1.235 r_mcangle_it 1.1 r_mcbond_it 0.61 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.185 r_dihedral_angle_4_deg 21.857 r_dihedral_angle_3_deg 13.036 r_dihedral_angle_1_deg 9.3 r_scangle_it 1.945 r_scbond_it 1.338 r_angle_refined_deg 1.235 r_mcangle_it 1.1 r_mcbond_it 0.61 r_nbtor_refined 0.299 r_nbd_refined 0.194 r_symmetry_hbond_refined 0.158 r_symmetry_vdw_refined 0.151 r_xyhbond_nbd_refined 0.14 r_chiral_restr 0.097 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1707 Nucleic Acid Atoms Solvent Atoms 80 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing