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Structure of the MAT domain of human FAS with malonyl-CoA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2JFD PDB ENTRY 2JFD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 16% PEG10K 0.16M MGCL2 0.08 M TRIS PH=8.5, pH 8.50
Crystal Properties Matthews coefficient Solvent content 2.7 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.917 α = 90 b = 91.41 β = 90 c = 261.609 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-10-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 41 99 0.07 17.3 7.22 78546
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.5 92.4 0.61 2.62 6.13
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2JFD 2.4 40.96 74428 3902 99.6 0.224 0.222 0.2307 0.271 0.2763 RANDOM 26.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.12 0.83 -4.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.377 r_dihedral_angle_4_deg 19.305 r_dihedral_angle_3_deg 17.845 r_scangle_it 10.193 r_scbond_it 8.68 r_dihedral_angle_1_deg 6.293 r_mcangle_it 4.384 r_mcbond_it 2.967 r_angle_refined_deg 1.415 r_angle_other_deg 1.385
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.377 r_dihedral_angle_4_deg 19.305 r_dihedral_angle_3_deg 17.845 r_scangle_it 10.193 r_scbond_it 8.68 r_dihedral_angle_1_deg 6.293 r_mcangle_it 4.384 r_mcbond_it 2.967 r_angle_refined_deg 1.415 r_angle_other_deg 1.385 r_symmetry_vdw_other 0.239 r_nbd_refined 0.226 r_nbd_other 0.19 r_symmetry_hbond_refined 0.185 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.154 r_symmetry_vdw_refined 0.131 r_nbtor_other 0.096 r_chiral_restr 0.071 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12036 Nucleic Acid Atoms Solvent Atoms 38 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing