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Mus musculus acetylcholinesterase in complex with tabun and HLo-7
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1J06 PDB ENTRY 1J06
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 27-30 % PEG750MME, 0.1 M HEPES PH 7.0
Crystal Properties Matthews coefficient Solvent content 3.8 70
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.92 α = 90 b = 108.94 β = 90 c = 220.32 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESERACH 2005-10-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 29.14 99.9 0.08 20.1 7.4 57837 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 100 0.42 5.6 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1J06 2.6 29.14 56619 1144 100 0.193 0.192 0.1905 0.243 0.2403 RANDOM 40.15
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.02 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.087 r_dihedral_angle_4_deg 19.683 r_dihedral_angle_3_deg 17.85 r_dihedral_angle_1_deg 6.678 r_scangle_it 2.615 r_scbond_it 1.564 r_angle_refined_deg 1.458 r_mcangle_it 1.216 r_mcbond_it 0.685 r_nbtor_refined 0.327
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.087 r_dihedral_angle_4_deg 19.683 r_dihedral_angle_3_deg 17.85 r_dihedral_angle_1_deg 6.678 r_scangle_it 2.615 r_scbond_it 1.564 r_angle_refined_deg 1.458 r_mcangle_it 1.216 r_mcbond_it 0.685 r_nbtor_refined 0.327 r_symmetry_vdw_refined 0.251 r_nbd_refined 0.237 r_symmetry_hbond_refined 0.235 r_xyhbond_nbd_refined 0.163 r_chiral_restr 0.091 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8352 Nucleic Acid Atoms Solvent Atoms 294 Heterogen Atoms 67
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling REFMAC phasing