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Structure of PKA-PKB chimera complexed with ISOQUINOLINE-5-SULFONIC ACID (2-(2-(4-CHLOROBENZYLOXY) ETHYLAMINO)ETHYL)AMIDE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YDS PDB ENTRY 1YDS
Crystallization Crystal Properties Matthews coefficient Solvent content 2.42 48.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.863 α = 90 b = 75.563 β = 90 c = 80.097 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 43.9 99 0.08 8.5 4 23262
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.23 100 0.36 2.6 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1YDS 2.15 43.88 23262 1217 99.3 0.203 0.2 0.259 RANDOM 28.97
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.53 1.06 -1.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.068 r_dihedral_angle_3_deg 15.96 r_dihedral_angle_4_deg 14.524 r_dihedral_angle_1_deg 5.908 r_angle_refined_deg 1.342 r_angle_other_deg 0.87 r_symmetry_vdw_other 0.223 r_nbd_refined 0.202 r_nbd_other 0.193 r_nbtor_refined 0.184
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.068 r_dihedral_angle_3_deg 15.96 r_dihedral_angle_4_deg 14.524 r_dihedral_angle_1_deg 5.908 r_angle_refined_deg 1.342 r_angle_other_deg 0.87 r_symmetry_vdw_other 0.223 r_nbd_refined 0.202 r_nbd_other 0.193 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.118 r_scangle_it 0.096 r_nbtor_other 0.088 r_chiral_restr 0.083 r_mcangle_it 0.079 r_scbond_it 0.075 r_mcbond_it 0.061 r_symmetry_hbond_refined 0.051 r_symmetry_vdw_refined 0.049 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2935 Nucleic Acid Atoms Solvent Atoms 294 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement