☰ Navigation Tabs
Structure of the fusion of NP275 and NP276, pentapeptide repeat proteins from Nostoc punctiforme
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2J8I PDB ENTRY 2J8I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 1.6 M AMMONIUM SULFATE 100 MM MES PH 6.5 PROTEIN 10 MG/ML
Crystal Properties Matthews coefficient Solvent content 1.87 33.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.605 α = 90 b = 55.47 β = 90 c = 58.989 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 194 IMAGE PLATE RIGAKU IMAGE PLATE M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 15.9 99.8 0.03 31.8 4.8 26666
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.58 99.8 0.12 11.2 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2J8I 1.5 59.03 25323 1343 99.7 0.175 0.174 0.1688 0.184 0.1809 RANDOM 13.68
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.6 -0.29 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.566 r_dihedral_angle_4_deg 16.346 r_dihedral_angle_3_deg 15.796 r_scangle_it 4.653 r_dihedral_angle_1_deg 4.137 r_scbond_it 2.972 r_angle_refined_deg 1.412 r_mcangle_it 1.375 r_mcbond_it 0.96 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.566 r_dihedral_angle_4_deg 16.346 r_dihedral_angle_3_deg 15.796 r_scangle_it 4.653 r_dihedral_angle_1_deg 4.137 r_scbond_it 2.972 r_angle_refined_deg 1.412 r_mcangle_it 1.375 r_mcbond_it 0.96 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.247 r_nbd_refined 0.236 r_symmetry_hbond_refined 0.125 r_xyhbond_nbd_refined 0.113 r_chiral_restr 0.095 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1326 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MOLREP phasing